Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1205 ATGTCCTTCCGCAGTATAGTTCGTGATGTAAGGGATGGTTTTGGAAGCTTATCAAGGCGGAGTTTTGAGGTAAGGTTTCATGGCCATCGCAGGGGCAAGTCACATAGTTCAGTCCATGAGGTACCAGAACAACCTCCGGTGATACAGAACAGCCGGTGGGCTTGCCTTCCACCGGAGCTCCTCCATGATGTTATCAAAAGATTGGAAGAAAGTGAGAGCACATGGCCTGCCCGTAAGCATGTGGTTGCATGTGCTGCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTGTGCAATCCAGAGTTCTGTGGGAAGATTACTTTTCCTGTTTCCTTGAAGCAGCCTGGGCCTCGGGATGGAATGATGCAGTGTTTCATCAAGAGAGACAAATCTAACCTGACATACCACCTCTTTCTTTGCCTAAGTCCTGCCTTGCTTGTTGAGAATGGAAAGTTTCTTCTCTCTGCCAAACGGACTAGACGAACAACTTGTTCCGAGTACATTATATCCATGGATGCTGATAGCATATCAAGATCTAGTAGCACTTATATTGGGAAACTAAGGTCAAATTTTCTGGGCACCAAATTCCTAATATATGATACACAGCCTTCCTATAATTATGCTCAGTTGCCTCCTGCTCCACCTAGCCAAAGCCGTAGATTCTATTCCAAAAAGGTGTCTCCGAAAGTCCCTAGTGGCAGCTACAATATTGCTCTGGTCACCTACGAGTTGAACGTGCTTGGTACTAGAGGCCCACGGAGGATGAACTGCACCATGAGCTCAATCCCAGAATCAGCTCTCGAACTTGGTGGCACTGTCCCGGGCCATCCAGAGCTCATTCCCCGTGCCCTGGAGGACTCATTCCGAAGTACAACATCCTTTTCGAAATCAATCCACAGTTCGTCCAATTTTAGCAGCTCTCGGTTCTCAGACATCATGTGGACTGGCAACGAAGAAGAGAGCAGCAAGGTAAAAGAGAGGCCACTGATTCTCAAGAACAAGGCTCCAAGATGGCATGAGCAGCTGCAATGCTGGTGCCTAAACTTCCGGGGCAGAGTGACTGTGGCCTCAGTCAAGAATTTTCAGCTGATTGCCACAGCGCAGCCTGCAGCCGGTGCTCCAACACCAGCACAGCCTGCCTCAACAGATCACGACAAGATTATTCTTCAGTTTGGCAAGGTGGGCAAGGATATGTTCACCATGGACTATCGATATCCTCTGTCGGCATTCCAGGCTTTCGCGATATGCTTAACTAGCTTTGACACTAAACTAGCATGTGAATAG 1290 0.4806 MSFRSIVRDVRDGFGSLSRRSFEVRFHGHRRGKSHSSVHEVPEQPPVIQNSRWACLPPELLHDVIKRLEESESTWPARKHVVACAAVCKSWREMCKEIVCNPEFCGKITFPVSLKQPGPRDGMMQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCSEYIISMDADSISRSSSTYIGKLRSNFLGTKFLIYDTQPSYNYAQLPPAPPSQSRRFYSKKVSPKVPSGSYNIALVTYELNVLGTRGPRRMNCTMSSIPESALELGGTVPGHPELIPRALEDSFRSTTSFSKSIHSSSNFSSSRFSDIMWTGNEEESSKVKERPLILKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIATAQPAAGAPTPAQPASTDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1205 429 SUPERFAMILY Tubby C-terminal domain-like 102 429 IPR025659 -
Lele47g1205 429 PRINTS Tubby superfamily signature 333 350 IPR000007 -
Lele47g1205 429 PRINTS Tubby superfamily signature 386 405 IPR000007 -
Lele47g1205 429 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Lele47g1205 429 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Lele47g1205 429 PRINTS Tubby superfamily signature 351 367 IPR000007 -
Lele47g1205 429 PRINTS Tubby superfamily signature 407 429 IPR000007 -
Lele47g1205 429 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Lele47g1205 429 ProSitePatterns Tub family signature 2. 414 429 IPR018066 -
Lele47g1205 429 Pfam Tub family 114 424 IPR000007 -
Lele47g1205 429 FunFam Tubby-like F-box protein 110 429 - -
Lele47g1205 429 ProSitePatterns Tub family signature 1. 351 364 IPR018066 -
Lele47g1205 429 Gene3D - 48 100 - -
Lele47g1205 429 SUPERFAMILY F-box domain 42 96 IPR036047 GO:0005515
Lele47g1205 429 FunFam Tubby-like F-box protein 48 101 - -
Lele47g1205 429 Gene3D Tubby Protein; Chain A 112 423 IPR025659 -
Lele47g1205 429 Pfam F-box domain 53 101 IPR001810 GO:0005515
Lele47g1205 429 PANTHER TUBBY-RELATED 44 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1205 Lele-ChrLele47 17467554 17470143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g1205 1 429 TUB Transcription Factor Family AT1G76900 67.763 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele47g1205 Tub 1e-114 CL0395