Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1199 ATGGACCCCAAGTTCGTCGGAAAGCCGCCGATGACGGTGGACCTCGAGCAGATGCCTGACGCCCCACAGCGTGGGTCCCACCACCGTAGGTCCCACTCCGACACCTCCTTCCGCATCGCCAACTTCGATGAGCTCCTTCTCTTCGACCCTTCCGACCTTGATATCTCCAACCTTCCTTCGCCGGCGTTGCCCAACTCCACCGGCGCCAACGTCTCTCCTTTCGCCGCTGCTGCTACAGCAAACAGCAGCGGCTTGCCTGCAGCCATAGATTTTGTCTCAAAGCCGTCGGAGGAATCCAACGGCAGGGATTCAAGGTCCAGACCCGCGGGTTCTCCTGTCGGTCATATCCGGAGCTTGTCCATGGACTCTGATTTTTTCAACGGCCTGGGATTGACTGGTGGCGTTGATGGGGACAAACTTGGCGGGCAAGTTGTTGAGGAGAGAAGGCCGGGTCATCACCGGCACAGCAATTCCATGGATGGGTCATCGTCGTGGTATTTTGAGGCCGACTCTTCCATGGCTATCGACGGTGTGAAGAAGGCCATGGCTCCTGATAAGCTCGCTGAACTTGCTCTAGCTGATCCCAAGAGAGCTCGGAGGATTCTTGCTAATAGGCAATCTGCTGCGCGATCAAAAGAGAGAAAAATTCGGTACACAAATGAGCTGGAAAGGAAGGTGCAGACGCTTCAAAATGAAGCAACTAACCTCTCTGCTCAGGTTACCATGCTTCAGAGAGACACTACTGGGTTGACCCATGAGAATAAGGAGCTTAAACTGCGCTTAGAGGCTATGGAACAACAAGCACACCTTAGAGATGCGCTGAATGAAGCATTGAAGGAAGAACTGCAGCGCCTGAAGCTACAAAGTAGTCAAATGGCTGCCATGAATGGCAACCCTTCTTATGGTGGTTTTCTCTCTCAATTTTCTTCTCAGTTAGCGTTGCAACATCTTCCTAATCCTCCATCCCAGCAGGCACAACAACAGCAATCACAGCCCGGCATGCCTCCATCATCCGCTGATCAGCCTTTCAACGGCCAGCCTGGCCCGGACTTCTTGGATTTCAATGGCAAGAACTAG 1077 0.533 MDPKFVGKPPMTVDLEQMPDAPQRGSHHRRSHSDTSFRIANFDELLLFDPSDLDISNLPSPALPNSTGANVSPFAAAATANSSGLPAAIDFVSKPSEESNGRDSRSRPAGSPVGHIRSLSMDSDFFNGLGLTGGVDGDKLGGQVVEERRPGHHRHSNSMDGSSSWYFEADSSMAIDGVKKAMAPDKLAELALADPKRARRILANRQSAARSKERKIRYTNELERKVQTLQNEATNLSAQVTMLQRDTTGLTHENKELKLRLEAMEQQAHLRDALNEALKEELQRLKLQSSQMAAMNGNPSYGGFLSQFSSQLALQHLPNPPSQQAQQQQSQPGMPPSSADQPFNGQPGPDFLDFNGKN 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1199 358 Coils Coil 212 267 - -
Lele47g1199 358 Pfam bZIP transcription factor 196 253 IPR004827 GO:0003700|GO:0006355
Lele47g1199 358 Gene3D - 195 248 - -
Lele47g1199 358 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 21 332 - -
Lele47g1199 358 MobiDBLite consensus disorder prediction 1 35 - -
Lele47g1199 358 MobiDBLite consensus disorder prediction 313 358 - -
Lele47g1199 358 CDD bZIP_plant_RF2 197 246 IPR044759 GO:0003700|GO:0006355
Lele47g1199 358 SMART brlzneu 192 256 IPR004827 GO:0003700|GO:0006355
Lele47g1199 358 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 194 257 IPR004827 GO:0003700|GO:0006355
Lele47g1199 358 MobiDBLite consensus disorder prediction 21 35 - -
Lele47g1199 358 SUPERFAMILY Leucine zipper domain 196 250 IPR046347 GO:0003700|GO:0006355
Lele47g1199 358 MobiDBLite consensus disorder prediction 94 117 - -
Lele47g1199 358 Coils Coil 271 295 - -
Lele47g1199 358 MobiDBLite consensus disorder prediction 313 344 - -
Lele47g1199 358 FunFam Transcription factor VIP1 195 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1199 Lele-ChrLele47 17444644 17447955 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g1199 9 354 bZIP Transcription Factor Family AT1G43700 48.361 4.46e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lele47g1199 bZIP_1 2.5e-07 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g0101 45 935606 941127 Lele47g1199 47 17444644 17447955 hybridization
Lele46g0127 46 709030 712225 Lele47g1199 47 17444644 17447955 hybridization