Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1196 ATGGGTAGAAAGAAGCCGACCGCCCGTGACGATGATAACGTGCCCACTGCATCTCAAGGCGGGGGAAAGTCCAAAAAGAAGGGGCTAGTGATCGATGATGATGAGTATTCTATTGGAACGGAGCTATCTGAGGAACCGCTGGTACAAGAAGAGAAGCCTGCAGCGACGGGAAAGAAGAAAGGTGAAAAAGGTAACTCGAAGGCTTCAAAAGACGAAGATTTAGAGAAGGCGATGGAAGATAATGATGACGATGATGATGTACCCGAAGTTGTGTTTACTGGGAAGAAGAAGGGGAAATCAAAAAAGGGTGGGAACAGTGCGTTTACTGGTTCGAGCTTTGGTTTGCTTGGTGACGAGGAGGGTGGAGAAGATGATGATGAAGATAAACAATCCGGCTTAACTGGTGGGTTGGACAATCATGACGACGAGGTTCTTAGTTTTTCAGGTAAGAAGTTCTCAAAGGGTTCCAAGAAGAAGGGTGGTAGCTTGTTCATTGCATCAGCTTTTGATGCTATAGACGAAGATGATGAAGGGGAGGTGATAGATAATTCTATGAAAGCCAGCCCTGAAGAGAACGATGACATGGATGAACCAGTTATTGCTTTTACGGGTAAGAAAAAATCATCCAAAAGTAGCAAGAAGGCTAGTGCCTTATTCACTGCATCTAGTTTTGGCGATACCGAAGGAGATCAGGACAAAAATGAACAAGAAGATGGGGATGAAGATGTTGCTCTGATCACTTTCTCAGGGAAGAAAAAGAAGTCATCGAAGTCTTCCAAGAAGGCTGTTAATTCATTTAGTGCAGCTTTTGCTGAAGAGGATGTGGATGATGATGATTCTGTGCTGGATTCTTCTAGAGCCGATGAAGAAAAGGCTGAGGACGAAGATGTTTCTGTTGTATTTTCAGGTAAGAAGAAGTCTTCCAAGAAAAACAAGACCGCTACTATCAAAGCTAGTGATGATTTTGAATCTGCCAATGAAGAGCAACTTAGCGTAATAGACAACAATAAAGGTAATAAGAGTGAAGAGGTTATTGAAAATTCGAAAAATAAAAAGAAGAAGAATAAAAAGAGTGGAAGAACTGCTCAAGAAGAGGAAGATTTGGACAAGCTTCTTGCTGAGCTTGGGGAGGGGCCTCCAGTAAAATCTGCTTCCCCTCCAGCAGAGGATGATAAAGTTCAGGCTTCTTCTGAGGTAGCTGCTCCTGCTATTGCTGTGGTGAAAAAAGTAGGGGAAGAAGAGACCATGGAGTCAGCTGCTGCAAAAAAGAAGAAGAATAAAAAGAGTGGAAGGACTGCTCAAGAAGAGGAAGATTTGGACAAGCTTCTAGCTGAGCTTGGGGAGGGGCCTCCAGTAAAATCTGCCTTCCCTCTAGCAGAGGATGATAAAGTTCAAGCCTCTTCTGAAGTAGCTGCTCCTGCTACTGCTGTAGTGGACAAAGACGGGGAAGAAGAGACAATGGAGTCAGCTGCTGCAAAAAAGAAGAAGAAGAAAAAGGAAAAGGAAAAGGAGAAGAAGGCCGCGGTGGCAGCGGCAGCTGCAAGTGCCCCTGATCATGGAAAGAAAGAAGAAGTTAAACCCGATACCTCAGAATCGAAGAAGAGTGATTCCAAGACTAAAGCGGCTGACAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAGGCACTGGCCCGAAGAAAAGAGGCTGAAGAGAGGAAGAAAAGGGAAGAGGAGGAGAGGCTAAGGAAGGAAGAAGAAGAGCGGCGTAGGCAAGAGGAACTTGAGAGGCAAGCAGAAGAGGCTAGACGTAGGAAGAAGGAAAGGGAGAAGGAGAAGCTCCAGAAGAAGAAGCAAGAAGGCAAATTGTTAACTGGTAAGCAAAAGGAAGAAGCTCGTCGTTTGGAGGCCATGAGGAAGCAGTTTCTTTCTGGTACAGGGGGTGTCACACTTCCTACTGGGGACTCTGGTGCACCGGCCAAACGACCCATATATAAGACAAAGAAGTCAAAACAAACTCATCATCACCAGAATGACACTGCCCCTGTTAAGGCAGATGAAGATGTGGAAGCAAAGGAAAATCTGGCGATCACTCGTGATGCAGAGTCATTGGAACCAGAGAAGGTTGAAGTGGTTGAATCAGTGCAGGATGAGGACAAAGTTAAACCGTCTGAAGATGTTCAAGAGGCAGAAGTTGAAGAGGATAATGAGGATGAATGGGATGCAAAGAGTTGGGATGATGTTAATTTAAATGGAAAAGGTGCATTTGCTGATGAGGAGGCTGACTCTGAACCAGAACCTGTAGTGAAAAAGGAGATAAAAAATGCGGCACCTCCAGCTGCTGTCAAGTCAACTGGCACAACCAAGAAAGCTGCTTCTCAGCCTCCAACTGAGCAAATCGAAAGTAAAAAGCAGGTTGAGAAGCAACCCCCTAAGCCGGATGGGCATCTACCATCAAATTCAGCTGTGCCTTCTCAGCCAAGTGGAGAGAACCTTCGTTCCCCAATTTGCTGTATTATGGGCCATGTGGACGCTGGTAAAACTAAGCTGTTGGATTGTATTCGACGTACTAATGTTCAGGAAGGTGAGGCTGGTGGCATCACGCAACAGATTGGTGCTACATACTTTCCTGCTGAGAACATACGTGAAAGAACAAAGGAACTAAAAGCTGATGCGAAGCTGAAAGTTCCAGGTCTACTGGTGATAGATACTCCTGGGCATGAATCTTTTACTAACTTAAGGTCAAGGGGTTCCGGTCTATGTGATATTGCAATTCTAGTTGTTGACATTATGCATGGATTACAACCTCAGACAATAGAATCACTCAATCTATTGAAAATGAGGAATACAGAATTCATAGTTGCATTGAACAAAGTTGACAGACTTTATGGTTGGAGAGCATGCACTAATTCTCCAATTGTGAAGGCAATGAAGCAGCAAACCAAGGATGTGCAAAATGAGTTCAATATGAGAGTTACTCAGACTATCACTCAATTCAAGGAACAGGGGTTAAACACTGAGTTGTACTATAAAAACAAGGAAATGGGAGAAACCTTCAGTATTGTACCTACCAGTGCTACAAGTGGTGAAGGTATCCCGGATTTGTTATTGTTGTTGGTTCAATGGACACAAAAAACAATGGCTCAGCAACTTACATACAGTGATGAAGTGCAGTGTACAGTTTTGGAGGTTAAGGTTGTTGAAGGTCATGGGACAACTATTGATGTTGTCTTGGTTAATGGTGTTCTTCATGAAGGAGAACAAATAGTTGTATGTGGAATGCAGGGGCCTATTGTTACTACTATTCGAGCTCTGTTGACACCTCATCCTATGAAGGAGCTCCGTGTTAAGGGCACATATCTCCATCATAAAGAAATTAAGGCTGCTATGGGTATCAAAATCACTGCCCAGGGGCTTGAACATGCTATTGCTGGCACTGCTTTACATGTGGTGAAGCCTAACGATGATTTAGAAGAAGTTAAAGAAGCAGCTATGGAAGATATGGAGACAGTCATGAGCAGGATTGACAAGAGTGGGGAGGGAGTTTGTGTACAGGCATCCACCCTTGGTTCTTTGGAAGCATTGCTGGAGTTTTTGAAAACACCAGAAGTAAATATTCCTGTTAGTGGTATAAGCATAGGCCCTGTACATAAAAAGGATGTAATGAAGGCCAGCGTAATGCTTGAAAAGAAAAGAGAGTTCGCCACTATCTTGGCATTTGATGTCAAAGTCAATCAGGAGGCTAAAGATCTTGCGGAAGAACTAGGTGTGAAAATTTTTATGGCCGATATCATTTATCACCTATTTGACCAATTCAAGGCCTATATTGACAACATTAAGGAAGAAAAGAAGAAGGAAGCAGCTGAAGAGGCAGTCTTCCCATGCGTTCTGAAAATCTTACCACGTTGCATTTTCAACAAGAAGGATCCAATTGTTTTGGGGGTTGATATTCTTGAAGGTGTTTTAAAGGTTGGGACTCCAATTTGTATTCCTTCCAGAGATTACATTGATATAGGTCGCATTGCATCCATTGAAAATAACAAAAAACCTGTTGATTATGCCAAGAAAGGGCAGCAAGTAGCCATTAAGATTGTTGGCAGCAATTCGGAGGAACAACAAAAAATGTACGGGAGGCATTTTGAGATCGATGACGAACTTGTAAGCCATATCACAAGGAGATCTATAGATATTCTCAAAGCTAATTATCGGGATGAACTTACTATGGAGGAATGGAGGCTGGTTGCGAAATTGAAAAATGTTTTCAGTATACAATGA 4254 0.4321 MGRKKPTARDDDNVPTASQGGGKSKKKGLVIDDDEYSIGTELSEEPLVQEEKPAATGKKKGEKGNSKASKDEDLEKAMEDNDDDDDVPEVVFTGKKKGKSKKGGNSAFTGSSFGLLGDEEGGEDDDEDKQSGLTGGLDNHDDEVLSFSGKKFSKGSKKKGGSLFIASAFDAIDEDDEGEVIDNSMKASPEENDDMDEPVIAFTGKKKSSKSSKKASALFTASSFGDTEGDQDKNEQEDGDEDVALITFSGKKKKSSKSSKKAVNSFSAAFAEEDVDDDDSVLDSSRADEEKAEDEDVSVVFSGKKKSSKKNKTATIKASDDFESANEEQLSVIDNNKGNKSEEVIENSKNKKKKNKKSGRTAQEEEDLDKLLAELGEGPPVKSASPPAEDDKVQASSEVAAPAIAVVKKVGEEETMESAAAKKKKNKKSGRTAQEEEDLDKLLAELGEGPPVKSAFPLAEDDKVQASSEVAAPATAVVDKDGEEETMESAAAKKKKKKKEKEKEKKAAVAAAAASAPDHGKKEEVKPDTSESKKSDSKTKAADKKVPKHVREMQEALARRKEAEERKKREEEERLRKEEEERRRQEELERQAEEARRRKKEREKEKLQKKKQEGKLLTGKQKEEARRLEAMRKQFLSGTGGVTLPTGDSGAPAKRPIYKTKKSKQTHHHQNDTAPVKADEDVEAKENLAITRDAESLEPEKVEVVESVQDEDKVKPSEDVQEAEVEEDNEDEWDAKSWDDVNLNGKGAFADEEADSEPEPVVKKEIKNAAPPAAVKSTGTTKKAASQPPTEQIESKKQVEKQPPKPDGHLPSNSAVPSQPSGENLRSPICCIMGHVDAGKTKLLDCIRRTNVQEGEAGGITQQIGATYFPAENIRERTKELKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLQPQTIESLNLLKMRNTEFIVALNKVDRLYGWRACTNSPIVKAMKQQTKDVQNEFNMRVTQTITQFKEQGLNTELYYKNKEMGETFSIVPTSATSGEGIPDLLLLLVQWTQKTMAQQLTYSDEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGEQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAMGIKITAQGLEHAIAGTALHVVKPNDDLEEVKEAAMEDMETVMSRIDKSGEGVCVQASTLGSLEALLEFLKTPEVNIPVSGISIGPVHKKDVMKASVMLEKKREFATILAFDVKVNQEAKDLAEELGVKIFMADIIYHLFDQFKAYIDNIKEEKKKEAAEEAVFPCVLKILPRCIFNKKDPIVLGVDILEGVLKVGTPICIPSRDYIDIGRIASIENNKKPVDYAKKGQQVAIKIVGSNSEEQQKMYGRHFEIDDELVSHITRRSIDILKANYRDELTMEEWRLVAKLKNVFSIQ 1417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1196 1417 Gene3D Translation factors 1048 1166 - -
Lele47g1196 1417 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1150 1279 IPR036925 -
Lele47g1196 1417 CDD IF2_aeIF5B_IV 1288 1383 - -
Lele47g1196 1417 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 518 1413 IPR015760 -
Lele47g1196 1417 FunFam Eukaryotic translation initiation factor 5B 1280 1417 - -
Lele47g1196 1417 MobiDBLite consensus disorder prediction 517 631 - -
Lele47g1196 1417 MobiDBLite consensus disorder prediction 181 203 - -
Lele47g1196 1417 MobiDBLite consensus disorder prediction 284 303 - -
Lele47g1196 1417 CDD IF2_eIF5B 828 1038 - -
Lele47g1196 1417 TIGRFAM small_GTP: small GTP-binding protein domain 830 955 IPR005225 GO:0005525
Lele47g1196 1417 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 825 1041 IPR000795 GO:0003924|GO:0005525
Lele47g1196 1417 MobiDBLite consensus disorder prediction 358 373 - -
Lele47g1196 1417 Coils Coil 546 617 - -
Lele47g1196 1417 FunFam eukaryotic translation initiation factor 5B 1048 1167 - -
Lele47g1196 1417 FunFam Eukaryotic translation initiation factor 5B 819 1047 - -
Lele47g1196 1417 Coils Coil 480 511 - -
Lele47g1196 1417 MobiDBLite consensus disorder prediction 45 75 - -
Lele47g1196 1417 Pfam Elongation factor Tu GTP binding domain 829 1037 IPR000795 GO:0003924|GO:0005525
Lele47g1196 1417 Gene3D Translation factors 1280 1417 - -
Lele47g1196 1417 PRINTS GTP-binding elongation factor signature 945 954 IPR000795 GO:0003924|GO:0005525
Lele47g1196 1417 PRINTS GTP-binding elongation factor signature 893 903 IPR000795 GO:0003924|GO:0005525
Lele47g1196 1417 PRINTS GTP-binding elongation factor signature 909 920 IPR000795 GO:0003924|GO:0005525
Lele47g1196 1417 PRINTS GTP-binding elongation factor signature 829 842 IPR000795 GO:0003924|GO:0005525
Lele47g1196 1417 Pfam Elongation factor Tu domain 2 1064 1141 IPR004161 GO:0005525
Lele47g1196 1417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 826 1116 IPR027417 -
Lele47g1196 1417 MobiDBLite consensus disorder prediction 213 227 - -
Lele47g1196 1417 MobiDBLite consensus disorder prediction 721 735 - -
Lele47g1196 1417 CDD aeIF5B_II 1049 1159 - -
Lele47g1196 1417 Pfam Translation-initiation factor 2 1152 1266 IPR023115 -
Lele47g1196 1417 Gene3D - 1167 1273 IPR036925 -
Lele47g1196 1417 MobiDBLite consensus disorder prediction 478 495 - -
Lele47g1196 1417 MobiDBLite consensus disorder prediction 750 764 - -
Lele47g1196 1417 MobiDBLite consensus disorder prediction 410 444 - -
Lele47g1196 1417 MobiDBLite consensus disorder prediction 410 823 - -
Lele47g1196 1417 MobiDBLite consensus disorder prediction 1 144 - -
Lele47g1196 1417 MobiDBLite consensus disorder prediction 175 396 - -
Lele47g1196 1417 MobiDBLite consensus disorder prediction 779 793 - -
Lele47g1196 1417 FunFam Eukaryotic translation initiation factor 5B 1167 1273 - -
Lele47g1196 1417 SUPERFAMILY Translation proteins 1284 1416 IPR009000 -
Lele47g1196 1417 Coils Coil 1147 1167 - -
Lele47g1196 1417 MobiDBLite consensus disorder prediction 667 720 - -
Lele47g1196 1417 Gene3D - 820 1047 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1196 Lele-ChrLele47 17423434 17431184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g1196 1 42 Eukaryotic Initiation Factors Gene Family AT1G76810 67.391 5.76e-07 52.4