Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1193 ATGGAAGGAAATTTATCTCAAGGAAGTATGGTTCCAGTTGTTGCTTCTTTTAGTGGTTTTGATTTGTCAGGATCAATGCGTGTTCATCAGCAAGCTGAGCACCCCCATAATATTCACCAACCTCAAACACATCTACGCCAAGGGTCCTCTGTGCATTCTGTTTGCCATGATGGTTTTCCTCTTGCCATGGGAACTTTGCAAAACTGTGATCAACCCATTTCAATGGCTGACTCTACTAAGGGAGATAGGAGCAAGAACTCAGCAAGTGAGGATGATGAACCAAGCTTGACTGAAGATGGAGCTGATGTTCGTAATGAAACAGTCAGAGGGAAAAAGGGTTCACCTTGGCAGCGTGTGAAGTGGACTGATGAGATGGTGAAGCTTCTTATAACAGCTCTCTCTTATATAAGTGAGGATTCAATTTCTGACAGTGGTAATGGAGGAAGAAGAAAGTTTGCAGTCCTACAAAAAAAGGGTAAGTGGAAGTCTATTTCTAAGGTCATGGCTGAAAGGGGTTACCGTGTTTCACCTCAGCAATGTGAGGATAAATTCAATGATCTTAATAAAAGGTATAAAAGACTTAATGACATGATTGGGAGGGGCACCTGTTGTCAAGTTGTTAAGAACCCTGCTCTGTTGGATGTACTAGATTATCTTTCTGACAAGGATAAGGAAGATATTCGGAAAATATTAGGCTCAAAACACCTGTTCTATGAAGAGATGTGTTCATACCATAATGGTAATAGATTGCATTTACCTCATGATCCTGTTTTGCAGCGTTCACTACAGGCAGCTCTTAGAAATAGGGATGACCATGATAATGATGATGTCAAAAGGTACCATTATGATGATCATGAAGAAGATGATCAAGATGTGGACACTGACGATCATGATGAATTTGAAGAGACTTATGCTTCACATCAAGATAATAGAAGCGTATATTGTGCATTGGGGGGATCTGCGAAGAAATTGACACACGGTCTAGTACAAGAAGATACCAAAATGTCTGAAAACTCCTTGAATTGTCAAGACTGCAATAAAAATTCTAATACCCATGGACCAATACTCCAATACGATGTGAAGCAAGGTTTACCTGAAGGCAATAGAGCAGCTTGGTTGCAGAAGCAATGGATTGAATCTCGTAATCTTGAGCTAGAAGAGCAGAGACTACAAATTCAGGTTGAAATGTTGGAACTGGAGAAACAGAGACTCAAGTGGCAGAGGTTTATTAAGAAAAAGGATCGGGAATTGGAGAAACTGAGGGTGGAAAATGAAAAAATGAAGCTTGAAAATGAACGTATAGCTTTGGAACTAAAGAGAAGGGAAATGGGTGCTGGCTTTAACTAG 1347 0.4024 MEGNLSQGSMVPVVASFSGFDLSGSMRVHQQAEHPHNIHQPQTHLRQGSSVHSVCHDGFPLAMGTLQNCDQPISMADSTKGDRSKNSASEDDEPSLTEDGADVRNETVRGKKGSPWQRVKWTDEMVKLLITALSYISEDSISDSGNGGRRKFAVLQKKGKWKSISKVMAERGYRVSPQQCEDKFNDLNKRYKRLNDMIGRGTCCQVVKNPALLDVLDYLSDKDKEDIRKILGSKHLFYEEMCSYHNGNRLHLPHDPVLQRSLQAALRNRDDHDNDDVKRYHYDDHEEDDQDVDTDDHDEFEETYASHQDNRSVYCALGGSAKKLTHGLVQEDTKMSENSLNCQDCNKNSNTHGPILQYDVKQGLPEGNRAAWLQKQWIESRNLELEEQRLQIQVEMLELEKQRLKWQRFIKKKDRELEKLRVENEKMKLENERIALELKRREMGAGFN 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1193 448 Coils Coil 410 442 - -
Lele47g1193 448 MobiDBLite consensus disorder prediction 83 111 - -
Lele47g1193 448 Pfam Myb/SANT-like DNA-binding domain 118 244 IPR044822 -
Lele47g1193 448 MobiDBLite consensus disorder prediction 267 286 - -
Lele47g1193 448 PANTHER F16F4.11 PROTEIN-RELATED 1 445 - -
Lele47g1193 448 MobiDBLite consensus disorder prediction 35 50 - -
Lele47g1193 448 MobiDBLite consensus disorder prediction 31 51 - -
Lele47g1193 448 MobiDBLite consensus disorder prediction 72 111 - -
Lele47g1193 448 Coils Coil 380 407 - -
Lele47g1193 448 MobiDBLite consensus disorder prediction 267 295 - -
Lele47g1193 448 Gene3D - 121 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1193 Lele-ChrLele47 17404833 17406179 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lele47g1193 Myb_DNA-bind_4 8.2e-23 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele47g1193 47 17404833 17406179 Lele47g1193 47 17404833 17406179 ECH
Lele45g0108 45 982365 984292 Lele47g1193 47 17404833 17406179 hybridization
Lele46g0133 46 755847 757193 Lele47g1193 47 17404833 17406179 hybridization