Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1191 ATGCCGGGGGACTCAACTGCGTTAGGAGGTGGCGGAGCTAGCTCTGGAGATGATGCGGCGGCGGCGGCGGCGGCATCTTCGGGAGGAGTTGCAGAACCGCATGACGGCGGTGAGTCAGTAGTTGCGGCAGCGGGTAGCGGTGGTGGAGGAGCTGGATCGAATTCAGGCGAAGAGGGTGGTGGTGGAGACAGAAGCTTCGGCGGCAACCGGTGGCCCCGCCAGGAGACTCTGGCGCTCTTAAAGATACGCTCCGACATGGACGTTGAGTTTCGAGACTCCAGCGTGAAGGGTCCCTTGTGGGATGAAGTTTCCAGGAAGCTAGCAGAACTTGGATACCAGAGAAGCGCCAAGAAGTGCAAAGAGAAATTCGAGAACGTTTACAAGTACCACAAGCGAACCAAAGAAGGCCGAACCGGCAAACCATACGGCAAAACGTACCGTTTTTTTGATCAGTTAGAAGCTCTCCATCACCATCCTCAAAACCAAAACCAACCTCATAATGCTAATTCTTTATTCATTCAATCCGCTTCTAATTCTGCTCCTCTACCTGCACCCCCAGTCTCCGTCATACCCACCACCCAACCTCCTCCGTCAGTCATGGTGGCGTCACAAGTAACTCCTCCTCCTCCTCCTCCTCCTCCTCATGTTAATGCTTCTACCACTAATGTTCCATCAATGAACACTACTTCAATCCCTCCATTGTACCCACCACCTCCAGCACCAGCAGCCGCAACGACGATAACAGCAAACCCTACATTTGTACCCTCGTTCGCGAGCATACCGACTGATCTTTTGTCGAATTCTAGTTCATCTTCTACATCGTCGGATGAGACGATAGATGCTAGGCGGAGGCGGAGGCGCAAGTGGAAGGACTTCTTCGAGAGGTTGATGAAGGAGGTGATAGAGAAGCAGGAGGAGTTGCAGAAGAGGTTTCTGGAAGCCATAGAGAAACGCGAGCACGAAAGAATGGTTCGAGAGGAATCATGGAGAATGCAGGAGATGGCCAGGATCAATAAGGAGAGAGAAATATTGGCGCAGGAAAGATCCATTGCTGCCGCCAAAGACGCTGCTGTAATGGCCTTCCTGCAGAAGATCGCTGAACAGCAGAATCTCGGCCAACCCGCCGCACCGACGACAAATAACATTAACATCCCCATTCCTCCGACATCGCAGCCTACGGCAGCTCCCGCACCTGCACCTCCGTCGTTGCAGCCACTGCAACATGTGACGGTGCAACAATCAACTTCAATTCTTTCTACTCCACCACCGGCTCCGCCTCCGCCTCCGCCAACTCAACAAGTTATAACGAGCATGGAAATTGTAGCTAAGACTGACAACGGGGATAACAGTAATTTGACGACCCCGGGTACCTCGTCGTCGAGGTGGCCGAAAGTTGAAGTAGAGACGCTGATAAAACTACGGACAAACATGGACGCCAAGTACGAGGAGAATGGGCCTAAGGGGCCGTTGTGGGAGGAAATCTCCTCCGCAATGAGGAGACTGGGGTACAACCGTAGCTCCAAGAGGTGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAGGTGAAGGAGAGCAACAAGAGAAGACCAGAAGATTCCAAGACGTGCCCGTACTTTCACCAGTTGGATGCTCTATACAGGGAGAAGAGTTTCAAGCTTCAGTCAGCGCAGCCGCCGCCGCCGGAGAACATGATGTCCACGCCTCTTATGGTGCGCCCAGAGCAGCAGTGGCCGCCGCAGCCGCAGCAAGAAACACGGCTACCGTCAGGGCCGCAAGTGATGATGGGAAGCGCGGGAAATGATGCCATGGAAGAAGACGAAGAAGAGGAAGACAAGGATAGAGAAGAAGAAGAAGATGAGGACGATGATGATGGAGGAAGTGGTACCTACGAGATAGTGGCAAGCACGCCAGCTACTTCAGTGGGTGCTTCTGAGTGA 1944 0.5309 MPGDSTALGGGGASSGDDAAAAAAASSGGVAEPHDGGESVVAAAGSGGGGAGSNSGEEGGGGDRSFGGNRWPRQETLALLKIRSDMDVEFRDSSVKGPLWDEVSRKLAELGYQRSAKKCKEKFENVYKYHKRTKEGRTGKPYGKTYRFFDQLEALHHHPQNQNQPHNANSLFIQSASNSAPLPAPPVSVIPTTQPPPSVMVASQVTPPPPPPPPHVNASTTNVPSMNTTSIPPLYPPPPAPAAATTITANPTFVPSFASIPTDLLSNSSSSSTSSDETIDARRRRRRKWKDFFERLMKEVIEKQEELQKRFLEAIEKREHERMVREESWRMQEMARINKEREILAQERSIAAAKDAAVMAFLQKIAEQQNLGQPAAPTTNNINIPIPPTSQPTAAPAPAPPSLQPLQHVTVQQSTSILSTPPPAPPPPPPTQQVITSMEIVAKTDNGDNSNLTTPGTSSSRWPKVEVETLIKLRTNMDAKYEENGPKGPLWEEISSAMRRLGYNRSSKRCKEKWENINKYFKKVKESNKRRPEDSKTCPYFHQLDALYREKSFKLQSAQPPPPENMMSTPLMVRPEQQWPPQPQQETRLPSGPQVMMGSAGNDAMEEDEEEEDKDREEEEDEDDDDGGSGTYEIVASTPATSVGASE 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1191 647 MobiDBLite consensus disorder prediction 603 629 - -
Lele47g1191 647 FunFam Trihelix transcription factor GT-2 71 132 - -
Lele47g1191 647 ProSiteProfiles Myb-like domain profile. 69 127 IPR001005 -
Lele47g1191 647 Coils Coil 290 317 - -
Lele47g1191 647 MobiDBLite consensus disorder prediction 373 388 - -
Lele47g1191 647 SMART sant 458 520 IPR001005 -
Lele47g1191 647 SMART sant 67 129 IPR001005 -
Lele47g1191 647 ProSiteProfiles Myb-like domain profile. 454 518 IPR001005 -
Lele47g1191 647 FunFam Trihelix transcription factor GT-2 462 523 - -
Lele47g1191 647 CDD GT1 69 134 - -
Lele47g1191 647 MobiDBLite consensus disorder prediction 264 283 - -
Lele47g1191 647 MobiDBLite consensus disorder prediction 578 592 - -
Lele47g1191 647 PRINTS Proline rich extensin signature 185 197 - -
Lele47g1191 647 PRINTS Proline rich extensin signature 380 405 - -
Lele47g1191 647 PRINTS Proline rich extensin signature 416 428 - -
Lele47g1191 647 PRINTS Proline rich extensin signature 205 221 - -
Lele47g1191 647 PRINTS Proline rich extensin signature 230 242 - -
Lele47g1191 647 MobiDBLite consensus disorder prediction 554 647 - -
Lele47g1191 647 MobiDBLite consensus disorder prediction 373 432 - -
Lele47g1191 647 CDD GT1 460 525 - -
Lele47g1191 647 Pfam Myb/SANT-like DNA-binding domain 460 547 IPR044822 -
Lele47g1191 647 Pfam Myb/SANT-like DNA-binding domain 69 155 IPR044822 -
Lele47g1191 647 PANTHER FI21293P1 40 603 - -
Lele47g1191 647 MobiDBLite consensus disorder prediction 1 71 - -
Lele47g1191 647 Coils Coil 602 622 - -
Lele47g1191 647 MobiDBLite consensus disorder prediction 389 403 - -
Lele47g1191 647 Gene3D - 71 132 - -
Lele47g1191 647 Gene3D - 462 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1191 Lele-ChrLele47 17385476 17388230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g1191 63 579 Trihelix Transcription Factor Family AT1G76880 55.128 6.44e-167 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lele47g1191 Myb_DNA-bind_4 5.8e-22 CL0123