Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1190 ATGGTTATGATCAAGAGGGTTGAAGATGTCCATCATCTTAGGGTATTCACCTTGTTTTCTGATTATTCTTTTCTCATCAGCTGTAATTGCTTACCCACAACTTGCCTCTCTCTCCCCCCACATCTCTATATGCAGCTGGGAGATCCGAGTGTGTTAGAGACCCCCTCCGGTAAGCCCACCATGACGGCGACTGCGCCACCAGAAGAAGCCGCAGCTTCCTTTAACGGCGGTGGGGCAGAAATCGAGCTAATGGATAGTGTTGTTGACTTGGATGCAACAAATTCAGGTGATGATATTGATCAGAAGAGAAGTGGTGGTGGTGATGGTGGCGGAGGAGGAGGAGGAGGGAACCGGTGGCCACGCCAGGAAACTTTTGCTCTCTTGAAGATAAGGTCAGATATGGACGCTGCGTTTCGGGATTCCAGTCTTAAAGGTCCACTTTGGGAACAAGTTTCAAGGAAAATGGCAGAACTTGGATATAATCGAAGCGCAAAGAAGTGCAAGGAGAAGTTCGAGAACGTGTACAAGTACCACAAGAGAACCAAAGAAAGCAGAATTGGTAAATCAGAAGGTAAAACCTACAAATTCTTTGATCAATTACAAGCCCTTGAAAATAAATTCACTCTCTCTCATATTCACACTCCTCCGTCAAAACCACCACTTCCTCCGCCACAGCCACAACCTCCACCTTCTTTCCAAACATGGCCCTGCAATATTAATAATGATCCTACCACAACTACTATCTCTTACGTCACTACTATGCCATCCACTATAAACCCTACTCTCATTTCTCCTCCTCCGCCGCCACCGGCGAATGTTGTTGCTGCCACCATGGCCAACCCTAGGAATTTGTCAAACAAGAGTCTTTTCTCGTCTATCACGACCACCTCGACCTCATCGTCGACTGCTTCCGATGAGGACATGGAAGAGAAGTACAGGAAGAAGAGAAAGATGAAGGACTACTTCCGGAGGCTGACGAGACAGGTGCTGGCCAAGCAGGAGGAGATGCAGAAGAGGTTTCTAGAAGCCATAGAGAAGAGAGAACGGGAAAGAGAAGCACAGTTAGAAGCTTGGAGAGCTCAAGAAATGGCCAGGATCAATAGAGATCATGACATTCTAGTCCAAGAAAGATCCACCGCGGCCGCCAAGGACGCTGCCGTCATTACTTTCCTCCAGAAGTTATCCGGCTTCCAGCAAAATCCGGCACCGCCACCGCCACCTCCTCCGGCTCCACCACAACCTTTAACGCAAGTAGAACCTCGTGAACAACTGCAATTGCTGCCTATTGACAACAAGTTTGAAATGCAGAAAGTGATGAACTTAAACAACGGCCATAACAATCCAGTGAGTGTATCTAATTCTTCTTCTTCTTCTTCAAGGTGGCCAAAGGCAGAAGTTCATGCACTGATAAGGCTAAGGACGAGCATGGACCCAAAGTATCAAGAGAACGGACCGAAAGGGCCGCTATGGGAGGACATATCGGCCGGAATGCAGAGGCTAGGGTACATTAGGAGCGCCAAGAGATGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAGAGCAACAAGCAAAGGCGTGAGGACAGCAAGACTTGTCCTTACTTTCATGAGCTCGATGCTCTTTACAAAGAGAAGAGCAAAGCCGTCTTCGGTGGTGACGGTGGAAATCCGAATCAAGAAATGATGATGGAGCCGTTGATGGTGCAGCCGGAGCAGCAATGGAGGCCGCCTCCGCCACATGCGGAGGAGGGGGAGGGTGGTTCTGCGAGGGAGATTGATGCAAATGATATCTTTGACTTCGAAGTAAGAGAAAGAGAAAGAGAGGGAGAAGAAGAGGAGGAGATGGAAGAAGGCGATGATAATGTTGTAGAAGATGAAGAGAGTATGGAAGATGATCATGAAGAAGAAGGACGTTATGAAGTTGCAGCGACAAATAATAAACTTCCTTCAGTGGATACTGTTGAATAA 1983 0.4755 MVMIKRVEDVHHLRVFTLFSDYSFLISCNCLPTTCLSLPPHLYMQLGDPSVLETPSGKPTMTATAPPEEAAASFNGGGAEIELMDSVVDLDATNSGDDIDQKRSGGGDGGGGGGGGNRWPRQETFALLKIRSDMDAAFRDSSLKGPLWEQVSRKMAELGYNRSAKKCKEKFENVYKYHKRTKESRIGKSEGKTYKFFDQLQALENKFTLSHIHTPPSKPPLPPPQPQPPPSFQTWPCNINNDPTTTTISYVTTMPSTINPTLISPPPPPPANVVAATMANPRNLSNKSLFSSITTTSTSSSTASDEDMEEKYRKKRKMKDYFRRLTRQVLAKQEEMQKRFLEAIEKREREREAQLEAWRAQEMARINRDHDILVQERSTAAAKDAAVITFLQKLSGFQQNPAPPPPPPPAPPQPLTQVEPREQLQLLPIDNKFEMQKVMNLNNGHNNPVSVSNSSSSSSRWPKAEVHALIRLRTSMDPKYQENGPKGPLWEDISAGMQRLGYIRSAKRCKEKWENINKYFKKVKESNKQRREDSKTCPYFHELDALYKEKSKAVFGGDGGNPNQEMMMEPLMVQPEQQWRPPPPHAEEGEGGSAREIDANDIFDFEVREREREGEEEEEMEEGDDNVVEDEESMEDDHEEEGRYEVAATNNKLPSVDTVE 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1190 660 CDD GT1 460 524 - -
Lele47g1190 660 MobiDBLite consensus disorder prediction 396 416 - -
Lele47g1190 660 MobiDBLite consensus disorder prediction 575 660 - -
Lele47g1190 660 MobiDBLite consensus disorder prediction 92 120 - -
Lele47g1190 660 Coils Coil 330 361 - -
Lele47g1190 660 MobiDBLite consensus disorder prediction 399 416 - -
Lele47g1190 660 Pfam Myb/SANT-like DNA-binding domain 117 203 IPR044822 -
Lele47g1190 660 Pfam Myb/SANT-like DNA-binding domain 459 546 IPR044822 -
Lele47g1190 660 ProSiteProfiles Myb-like domain profile. 117 175 IPR001005 -
Lele47g1190 660 CDD GT1 117 182 - -
Lele47g1190 660 MobiDBLite consensus disorder prediction 215 231 - -
Lele47g1190 660 PANTHER FI21293P1 73 585 - -
Lele47g1190 660 MobiDBLite consensus disorder prediction 589 610 - -
Lele47g1190 660 Gene3D - 119 180 - -
Lele47g1190 660 Gene3D - 461 522 - -
Lele47g1190 660 FunFam Trihelix transcription factor GT-2 461 522 - -
Lele47g1190 660 SMART sant 115 177 IPR001005 -
Lele47g1190 660 SMART sant 457 519 IPR001005 -
Lele47g1190 660 ProSiteProfiles Myb-like domain profile. 453 517 IPR001005 -
Lele47g1190 660 MobiDBLite consensus disorder prediction 611 639 - -
Lele47g1190 660 MobiDBLite consensus disorder prediction 210 231 - -
Lele47g1190 660 FunFam Trihelix transcription factor GT-2 119 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1190 Lele-ChrLele47 17373386 17376699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g1190 113 579 Trihelix Transcription Factor Family AT1G76880 51.497 7.34e-140 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lele47g1190 Myb_DNA-bind_4 1.9e-21 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g0110 45 1011883 1014405 Lele47g1190 47 17373386 17376699 hybridization
Lele46g0135 46 782010 784463 Lele47g1190 47 17373386 17376699 hybridization