Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1177 ATGGCAGATATTGCTAGCTACGGGAATGCCGACCGTGACTTAGAGCAGATTTGCAAGGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGCCGCAAAGCTCTGATATCTTCTGGTCAAGGTGGGCGGTCCAAAATTGATGGGTGGAGTGATGTTGGTCTCTATCTTGATGATAACAGAGACTTGGCATCAAGTAGTCCAAGTGAAAGTTCAGTTAGTGCACTAGATATTAAATCTCCTGATACTTCTGTGAATTCTAATCCTAATACTGCTTCAAAGTCCTTTCGACCAGTGAAGTCTGTGAATTCTGAAAGATCAGATTCACCTTTAGACCCTTCAAATATGCAAGCAAAAGGATCTGGTTCAGATGCTTTTCGAGTTAGTGTTTCAAGTGCCCCAAGCACATCAAGTCATGGATCTGCACCAGATGACTGTGATGCTCTGGGTGATGTATACATATGGGGGGAGGTTATCACTGAGAATGTTATGGGAGTTGGTGTAGATAAAATTTTCAATCACTTCAGTCCAAGGGTAGATGTGCTTTTGCCCAGGCCACTGGAGTCCAATGTAGTTTTAGACGTACATCATATAGCATGTGGGGTTAAACATGCCGCACTAGTCACAAGGCAAGGCGAAGTATTTACTTGGGGTGAAGAATCTGGAGGACGTCTAGGCCATGGTGTTGAGAACAATGTGGTTCAACCTCGTCTAGTTGAAGCTTTGGCTTCTACAACTGTTGAGTTTGTTGCTTGCGGGGAGTTTCACACCTGCGCTGTTACAATGGCTGGGGAGCTATATACTTGGGGTGATGGAACTCATAATGCTGGACTTCTTGGTCATGGCACTGACGTAAGTCATTGGATACCAAAACGAATTTCAGGTCTACTTGAGGGACTTCAAGTTGCTTTTGTCACTAGTGGTCCATGGCACACAGCCTTGATAACTTCAACTGGGCAACTCTTCACATTTGGTGATGGAACATTTGGTGTCCTGGGCCATGGAGATAGAGAGAATGTTTCATATCCTAGAGAAGTACAATCATTGTCAGGGTTAAGAACATTAGCTGTTGCGTGTGGAGTGTGGCATACTGCAGCTGTGGTCGAGGTTATTATGACACAATCAAGTGCAAGTGTATCATCTGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGACATGGAGACAAGGAGTCCCGACTTGTACCAACTTGTGTGCCTTTGCTCATTGATTACAATTTTTATAACATTGCTTGTGGTCACAGTTTGACAGTTGGCCTCACAACATCAGGACGCGTTTTTACAATGGGAAGCACTGTTTATGGTCAGCTTGGCAATTCACTGTCTGATGGAAAGCTGCCCTTCTTGGTCGAAGACAAGCTCTCTGAAGAATGTGTTGAAGAAATTGCATGTGGTGCATATCATGTTGCAGTTTTAACGTCCAAAAATGAAGTTTATACGTGGGGGAAGGGTGCTAATGGGAGGTTGGGTCATGGGGACGTTGAAGATCGAAAAACCCCAACTTTGGTTGAAGCTTTGAAAGATAGACATGTTAAAAATATTGCATGTGGTTCCAACTACACTGCTGCCATATGCCTTCATAAATGGGTTTCGGGTGCTGAGCAGTCTCAGTGCTCTACTTGTAGACAGCCATTTGGTTTCACTAGAAAGAGGCACAACTGTTATAATTGCGGGCTTGTGCATTGCCATTCATGCAGTTCAAGGAAAGCATTGAGAGCAGCTCTGGCTCCTAATCCTGGAAAGCCATATCGTGTTTGTGATTCTTGTTTTGTAAAATTGAACAAGGTGGCAGAATCTGGCATTAATAATAGAAGGAATGCCATGCCTCGTTTGTCTGGTGAAAACAAGGACACGTTAGACAAGTATGAGATAAGGTTGGCCAAGTCACCGGTTCCTTCTAATATGGATTTGATAAAGCAGCTAGATAGCAAGGCAGCTAGACAAGGTAAGAAGACTGATACATTCTCTCTGGTTCGCACCTCACAAACCCCTTTGCTGCAACTGAAAGATGTTGCCCTGTCTACTGTTGATCTGAGACGCACAGCTCCAAGGCCAGTTCTGACATCTTCTGGAGTAAGCTCCAGGTCTGTGTCCCCATTTTCTAGAAGACCAAGTCCACCTCGTTCAGCTACGCCTATTCCAACAACATCAGGACTTTCTTTCTCAAAGAGTATAAATGATAGTCTAAAGAAAAGCAACGAACTTTTAAATCATGAAGTGATGAAGTTACGCACTCAGGTTGAGAGCCTGAGAAAAAGGTGTGATTTGCAAGAATTAGAGCTTCAAAGGGCAGAAAAGAGAACTCAGGAAGCTATGGCGATGGCTGCTGAGGAATCTGCTAAATCTAAAGCTGCAAAAGAAGTTATAAAGTCACTTACAGCACAGCTTAAAGATCTAGCCGAGAGGCTACCTCCAGGAGCTTATGACGCTGACAGCATCCCGCCAGCTTACCTGCCAAATGGCGTCCTCTATCCTGACTCGAATTGGGAGGGACATACTAGAGCAGAGTCAATCAGTGGATCTAGCCTGGCCTCCTTTGCTCTTGAATCTTCTCTATTCAACAAAAGTGAGGTCACAGGAACTTATGCAACCAATCCTTACCAGCAAAACCGGGTGCTCGTGCCTTCCAATGGGACAAATGAATACCCAAATGTTATACATGCGAATGGCAGCTTGTTTCAGGCAACTAACAATAGCATATTAGATGCCGCTTATGGCAGGAATTCTGGGCCTCTCCAAGATGGCGAGAGTGGTCCAAGATCAAGGAATGCTGTGCTGGCTTCTAATAGTAATTATATTGAGGCTGAATGGATTGAACAATATGAACCTGGGGTGTATATAACACTCATGGCCTTAAACGATGGAACGAGAGATCTAAAACGAGTGCGCTTCAGCCGACGAAGATTTGGAGAGCACCAAGCAGAGACATGGTGGTCCGAGAATCGTGAGAAGGTATATGAAAAGTACAATGTCCGTAGTAGTACTGAGAAGTCTTCGAGCCAAGCGGCTCGTGGGGCAGAAGGTGCAGTTTCACCTGTTTCATAA 3069 0.4451 MADIASYGNADRDLEQICKDKVEAEVWIAGRKALISSGQGGRSKIDGWSDVGLYLDDNRDLASSSPSESSVSALDIKSPDTSVNSNPNTASKSFRPVKSVNSERSDSPLDPSNMQAKGSGSDAFRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEVITENVMGVGVDKIFNHFSPRVDVLLPRPLESNVVLDVHHIACGVKHAALVTRQGEVFTWGEESGGRLGHGVENNVVQPRLVEALASTTVEFVACGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGLLEGLQVAFVTSGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVQSLSGLRTLAVACGVWHTAAVVEVIMTQSSASVSSGKLFTWGDGDKNRLGHGDKESRLVPTCVPLLIDYNFYNIACGHSLTVGLTTSGRVFTMGSTVYGQLGNSLSDGKLPFLVEDKLSEECVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKNIACGSNYTAAICLHKWVSGAEQSQCSTCRQPFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCFVKLNKVAESGINNRRNAMPRLSGENKDTLDKYEIRLAKSPVPSNMDLIKQLDSKAARQGKKTDTFSLVRTSQTPLLQLKDVALSTVDLRRTAPRPVLTSSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSINDSLKKSNELLNHEVMKLRTQVESLRKRCDLQELELQRAEKRTQEAMAMAAEESAKSKAAKEVIKSLTAQLKDLAERLPPGAYDADSIPPAYLPNGVLYPDSNWEGHTRAESISGSSLASFALESSLFNKSEVTGTYATNPYQQNRVLVPSNGTNEYPNVIHANGSLFQATNNSILDAAYGRNSGPLQDGESGPRSRNAVLASNSNYIEAEWIEQYEPGVYITLMALNDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYEKYNVRSSTEKSSSQAARGAEGAVSPVS 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1177 1022 SUPERFAMILY RCC1/BLIP-II 147 537 IPR009091 -
Lele47g1177 1022 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 355 365 IPR000408 -
Lele47g1177 1022 PRINTS Chromosome condensation regulator RCC1 signature 303 319 IPR000408 -
Lele47g1177 1022 PRINTS Chromosome condensation regulator RCC1 signature 421 439 IPR000408 -
Lele47g1177 1022 PRINTS Chromosome condensation regulator RCC1 signature 262 278 IPR000408 -
Lele47g1177 1022 PRINTS Chromosome condensation regulator RCC1 signature 479 500 IPR000408 -
Lele47g1177 1022 PRINTS Chromosome condensation regulator RCC1 signature 212 228 IPR000408 -
Lele47g1177 1022 PRINTS Chromosome condensation regulator RCC1 signature 319 333 IPR000408 -
Lele47g1177 1022 ProSiteProfiles BRX domain profile. 943 998 IPR013591 -
Lele47g1177 1022 CDD FYVE_like_SF 545 598 - -
Lele47g1177 1022 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 196 206 IPR000408 -
Lele47g1177 1022 MobiDBLite consensus disorder prediction 1000 1022 - -
Lele47g1177 1022 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 14 803 - -
Lele47g1177 1022 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 148 209 IPR000408 -
Lele47g1177 1022 MobiDBLite consensus disorder prediction 60 141 - -
Lele47g1177 1022 SUPERFAMILY FYVE/PHD zinc finger 536 606 IPR011011 -
Lele47g1177 1022 FunFam PH, RCC1 and FYVE domains-containing protein 1 370 541 - -
Lele47g1177 1022 FunFam PH, RCC1 and FYVE domains-containing protein 1 119 369 - -
Lele47g1177 1022 Pfam Transcription factor BRX N-terminal domain 785 818 IPR027988 -
Lele47g1177 1022 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 303 313 IPR000408 -
Lele47g1177 1022 SMART fyve_4 534 603 IPR000306 GO:0046872
Lele47g1177 1022 Pfam FYVE zinc finger 536 602 IPR000306 GO:0046872
Lele47g1177 1022 Gene3D - 97 373 IPR009091 -
Lele47g1177 1022 Gene3D - 374 548 IPR009091 -
Lele47g1177 1022 Coils Coil 734 810 - -
Lele47g1177 1022 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 210 261 IPR000408 -
Lele47g1177 1022 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 262 316 IPR000408 -
Lele47g1177 1022 MobiDBLite consensus disorder prediction 60 140 - -
Lele47g1177 1022 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 549 608 IPR013083 -
Lele47g1177 1022 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 484 535 IPR000408 -
Lele47g1177 1022 Pfam Regulator of chromosome condensation (RCC1) repeat 317 365 IPR000408 -
Lele47g1177 1022 Pfam Regulator of chromosome condensation (RCC1) repeat 262 313 IPR000408 -
Lele47g1177 1022 Pfam Regulator of chromosome condensation (RCC1) repeat 485 532 IPR000408 -
Lele47g1177 1022 Pfam Regulator of chromosome condensation (RCC1) repeat 431 480 IPR000408 -
Lele47g1177 1022 Pfam Regulator of chromosome condensation (RCC1) repeat 210 258 IPR000408 -
Lele47g1177 1022 Pfam Regulator of chromosome condensation (RCC1) repeat 379 426 IPR000408 -
Lele47g1177 1022 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 540 602 IPR017455 -
Lele47g1177 1022 Pfam Transcription factor regulating root and shoot growth via Pin3 942 997 IPR013591 -
Lele47g1177 1022 MobiDBLite consensus disorder prediction 694 732 - -
Lele47g1177 1022 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 317 368 IPR000408 -
Lele47g1177 1022 FunFam Putative E3 ubiquitin-protein ligase HERC1 542 610 - -
Lele47g1177 1022 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 380 431 IPR000408 -
Lele47g1177 1022 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 432 483 IPR000408 -
Lele47g1177 1022 MobiDBLite consensus disorder prediction 694 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1177 Lele-ChrLele47 17236316 17241588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g1177 936 997 Major Intrinsic Protein MIP AT1G31880 61.290 5.28e-20 91.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g0120 45 1122285 1127534 Lele47g1177 47 17236316 17241588 hybridization
Lele46g0144 46 857955 863014 Lele47g1177 47 17236316 17241588 hybridization