Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1155 ATGAATTCGATTCGTGCGGCTTATTATTACTGTCCATCATATCTCTGCGATGTTTCTTCTTCTGATAATACCATTAGTATGCAGAAAAAGGAAATGGATCATCAGGGGCATAATGTTGAGATGAATCTTCTTGCGGAAAACTTCGATCCGAGTTTGATTGCAAGGATTAGGGATGATGGATATGAAAGCCGTTCTGGGAGTGATAATTTCGATGGCGTATCAGGCGAAGATGATCAGGATATTGCTGGTGATGATAGCACCCCTAATCAGAGATCCAACAAAAAGTACCATCGACACACTCCCCACCAGATTCAAGAGCTTGAAACTTTCTTCAAGGGTTGTCCTCATCCTGACGAGAAACAAAGACTTGAACTAAGCAGGAGGCTTGGCTTGGAGACTAAGCAAGTCAAATTCTGGTTTCAAAATCGTCGAACCCAGATGAAGACCCAACTGGAGCGCCATGAGAACCTGATGCTGAGGCAAGAAAATGACAAGCTGAGAGCAGAGAACAGTATGATGAAGGAAGCCATGGCGAACCCAATATGCAACAACTGTGGAAGTCCAGCAATTCCTGGGCAAATCTCATTCGAAGAACACCAACTAAGGATTGAGAATGCTCGATTGAAGGACGAACTGAATCGTATATGTGCCTTGTCCAATAAGTTTCTGGGGAGGCCAATCTCAACCATGGGTCTTCCAAGCTCAAATGCGGGTCTTGAACTAGCCATTGGAAGGAACAATAATGCTACTATCAGTGGGATTGGTGGTATCGGTACCGGTGTCGGGTCGAGTTTCCCGATGGGCCTCGATATGGGGATGACGATGCAAATGGGGAATGATCAAGCACAGGCTTCTGAGAGATCCTTGCTTATAGACCTTGCCTTGTCTGCTATGGAGGAATTGATGAAGATGGCTCAAGTAGATTCCCCTCTTTGGATTAGGACGTTGGATGGCGAAAATGAAGTTCTGAATCTGGAGGAGTATGTTCGGATTTTTCCTCCTTGCCTTGGCCCAAAACCTCACGGTTATGTCACTGAAGCTACTAGAGACACGGGAATAGTGATGATCAGCAGTTTGTCCCTCATTGGAACTTTAATGGACCCGAATCGATGGGTGGAGATGTTTCCGGGCATGATTGCTAGAGCTGTGCCGCTCGATATGATATCAAGTGGCATGGGAGGAACCAGAAGCGGTACTTTGTTCGTGTTGGAAGCTGAGTTGCAGATGCTGTCGCCTCTGGTGCCTGTTAGGCAAACGAGGTTGCTGAGATTATGCAAGCAACAAGCAGAAAATCTATGGGCGGTGGTTGATATATCAGTTGAGATTGGTCGTGACCCCACCAATGTACACCCTTTCGTCACATGCAGGAGGCTTCCTTCTGGCTGCCTTGTGCAAGATATGCCCAACGGTTACTCCAAGGTTACTTGGGTGGAGCATTGGCAGTACGATGAGAATGCGGTGCACCAACTTTACCGTCCGATAGTGAACGGCGGCATCGGCTTCGGTGCTCGTAGATGGATCGCTACCCTCCAAAGGCAATGTGAATGCTTGGCCATCCTCTTGTCCCCTTCCTTGGCTACTGATGATCATGCCGCACTGAGCCAAGGTGGTCGGCGAAGCATGGTGAAGCTGGCACAACGCATGGTGGACAACTTCTGTTCTGGGATCATCGCTTCGTCGAACCGGAGATGGGAAAGCCTTCATGTGGGGACTCTAGGAGATGACGTGAGGATTATGACTCGGAGGAACGAAGGTGAGCCTGGAGTTCCTCCGGGAGTCATGGTCAGCGCTGCGACTTCCTTCTGGCTGCCCGTGTCGCGGCAAGGGTTGTTTGACTTCCTCCGTGACGAATGCCGGAGATTCGAGTGGGACATCTTGTCCAATGGCGCCGGAACCACGCAGGAAGTGGCTGTCATTGCAAAAGGACAGACACATGGGAACTGTGTTTCTCTTCTTCGGAACAACGGCGTGAACGGGAACGATACCGGCATGGCGATGCTGCAAGAGACATGGACGGATGGTACTGGGTCCATGGTGGTTTATGCACCGGTTGATGTGCAGTCGCTGAACGTGGTGATGAGCGGCGGCGATTCTTCGTACGTGACTCTCTTGCCTTCTGGGTTTGCCATTCATCCCGACGGTCCTAATGGCGGCCACAACGGGAGTCCTGGGGGTGACGGTGGGAGTGAGGGAAGCATACTTACAGTAGGGTTACAGATACTGATCAACAGCCAGCCATCATGGACGCTGACGATGGAGTCCATTGAAACTGTCAACAATCTGATGACAACCACAGTTCAGAAGATCAAAGAAGCGATCAGAGTTGCATGA 2331 0.4968 MNSIRAAYYYCPSYLCDVSSSDNTISMQKKEMDHQGHNVEMNLLAENFDPSLIARIRDDGYESRSGSDNFDGVSGEDDQDIAGDDSTPNQRSNKKYHRHTPHQIQELETFFKGCPHPDEKQRLELSRRLGLETKQVKFWFQNRRTQMKTQLERHENLMLRQENDKLRAENSMMKEAMANPICNNCGSPAIPGQISFEEHQLRIENARLKDELNRICALSNKFLGRPISTMGLPSSNAGLELAIGRNNNATISGIGGIGTGVGSSFPMGLDMGMTMQMGNDQAQASERSLLIDLALSAMEELMKMAQVDSPLWIRTLDGENEVLNLEEYVRIFPPCLGPKPHGYVTEATRDTGIVMISSLSLIGTLMDPNRWVEMFPGMIARAVPLDMISSGMGGTRSGTLFVLEAELQMLSPLVPVRQTRLLRLCKQQAENLWAVVDISVEIGRDPTNVHPFVTCRRLPSGCLVQDMPNGYSKVTWVEHWQYDENAVHQLYRPIVNGGIGFGARRWIATLQRQCECLAILLSPSLATDDHAALSQGGRRSMVKLAQRMVDNFCSGIIASSNRRWESLHVGTLGDDVRIMTRRNEGEPGVPPGVMVSAATSFWLPVSRQGLFDFLRDECRRFEWDILSNGAGTTQEVAVIAKGQTHGNCVSLLRNNGVNGNDTGMAMLQETWTDGTGSMVVYAPVDVQSLNVVMSGGDSSYVTLLPSGFAIHPDGPNGGHNGSPGGDGGSEGSILTVGLQILINSQPSWTLTMESIETVNNLMTTTVQKIKEAIRVA 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1155 776 Coils Coil 766 776 - -
Lele47g1155 776 SUPERFAMILY Bet v1-like 537 770 - -
Lele47g1155 776 SMART HOX_1 92 154 IPR001356 GO:0003677
Lele47g1155 776 MobiDBLite consensus disorder prediction 60 101 - -
Lele47g1155 776 FunFam Homeobox-leucine zipper protein HDG1 77 166 - -
Lele47g1155 776 SMART START_1 292 516 IPR002913 GO:0008289
Lele47g1155 776 SUPERFAMILY Homeodomain-like 83 150 IPR009057 -
Lele47g1155 776 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 92 773 IPR042160 -
Lele47g1155 776 SUPERFAMILY Bet v1-like 288 516 - -
Lele47g1155 776 Pfam Homeodomain 94 148 IPR001356 GO:0003677
Lele47g1155 776 Gene3D - 81 166 - -
Lele47g1155 776 CDD homeodomain 94 150 IPR001356 GO:0003677
Lele47g1155 776 ProSitePatterns 'Homeobox' domain signature. 125 148 IPR017970 GO:0000981|GO:0006355
Lele47g1155 776 Coils Coil 144 179 - -
Lele47g1155 776 ProSiteProfiles 'Homeobox' domain profile. 90 150 IPR001356 GO:0003677
Lele47g1155 776 CDD START_ArGLABRA2_like 287 515 - -
Lele47g1155 776 Pfam START domain 293 516 IPR002913 GO:0008289
Lele47g1155 776 ProSiteProfiles START domain profile. 283 519 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1155 Lele-ChrLele47 17032725 17036197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g1155 12 773 Homeobox Transcription Factor Family AT3G61150 52.357 0.0 783
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele47g1155 START 3.5e-42 CL0209