Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1140 ATGGGGGTGAAGCATCTGTGGGATATCCTTGAATCCTGCAAGAAAACAGTTCCACTTCGTCATCTCCAGAACAAGAGGATATGCATAGATCTCTCATGTTGGATAGTTCAACTTCAGAATGTGGGAAAATCAATCTCATGTGTGAAGGAGAAACTCTACCTCAGCGGTCTCTTTCACCGCATTAGAGCACTCATTGCTTTGAATTGCAGCATAATTTTTGTCACAGATGGATCAATTCCTGGCATTAAATTATCAACTTATAGGCAACGTTTAAACTTTGGAAAAGATGTAGCACAAAATGAAATCAACCTACAGAAAATGTCTTCTTTACCGAGGAACAGGGGATCTGAGTTTTCATGCATGATAAAAGAGGCTCGCATCTTGGGAATGGCTCTTGGCATTCCTTGTCTGAACGGGATTGAAGAAGGTGAAGCTCAATGTGCTTTGTTGAACTCTGAATTATTGTGTGATGGATGTTTCAGTTCAGATTCAGATATCTTTCTTTTTGGTGCAAGGACAGTGTATAGGGATATCTGCCTTGGAGATGGTGGATATGTTGTTTGCTATGAGATGGAAGACATTGAAAGAAAACTTGGATTTGGAAGGGACTCATTGATTGCTCTAGCCTTACTTCTTGGGAGTGATTATAGTCAAGGAGTTTACGGTATAGGTCCGGAGTCAGCTAGTCAAATAGTTAGATCAATTGGTGACAAATGTGTTCTCCAAAAATTTGCTTCTGAAGGAATTGAAGGTCTGAAAACACTGAAAGGTGCAAAGAAGCTGGGGCAAGTTTTCAAGAACAGCAACAAAGAAAATATGTTGGACCATGATATGGCATTGAATCATGGAGGCGAGAACAATTCACAAAAAGATTATAACTTCTTGCAAGTTATCAATGCTTATGTGAAGCCAAAATGCCACCCGGCAGACTCCGATATTGTGATGAGGGTTCTTGCTCAGTATCCATTTCAACGTAGTAAACTCCAGCAGATATGTGCTGAATTCTTTCAGTGGCCTCCGGAGAAAACAGATGAGTATATACTTCCAAAGATAGCTGAAAGGGATTTACGACGATTTGCCAATTTGCGCTTAACTTCATCAGAAGCAGGAGCGAATCTTCCTTTGAATGAAATCCCTGTAAAGTGTCCTGTCTCGGAAATCATCAAGTGCCGAAAAGTTCAAGGAAGAGAATGCTATGAGGTGTCATGGAATGAAATGGATGGACTTGGAACTTCAATAGTACCGGCAGATCTTTTAAAAAGTGCTTGTCCTGAGAAGATTTTAGAGTTTGAGGAGAAAAAGGGTCGGCTCAAGAAACAAAATGCTCAAAAAAGAAGACCAAAGAAAACTCTATCATATTCTATGGCTGAACTTGACCTGAAACTCACGAATCTGTCACTGGATATCAATCTGGGAGACCATGCCAACAATCACAAAGCCTCTGATTCATCAGAACAGGTATTTCAAGATGAATCTGCTATGGATGATGAAGCTTATCTGCATAACAGAGACTTTTCGTGTTCATCACATGATGAACAGATTGAATGGAATCAAAATGTGATCAAGACATCTGAGAATCAGGAGGGTGATTCCATGGCTAGAAACGAGGTCATTGATTTACTGAGTCCTTCCCCACCTAAGCAGTTGCATGCTTCCTCCAAGTGTCAACAGTCGAATGGTGGACATATTGAGGTGATAAATTTGAGTGATTCAGACAGTGACACGTCACCTGAACATAAGAAGAAAGCAAAGGAGTTGAGAATGTTCTTAGAAGGAATTAGGTATGATCTCCATTGA 1797 0.4035 MGVKHLWDILESCKKTVPLRHLQNKRICIDLSCWIVQLQNVGKSISCVKEKLYLSGLFHRIRALIALNCSIIFVTDGSIPGIKLSTYRQRLNFGKDVAQNEINLQKMSSLPRNRGSEFSCMIKEARILGMALGIPCLNGIEEGEAQCALLNSELLCDGCFSSDSDIFLFGARTVYRDICLGDGGYVVCYEMEDIERKLGFGRDSLIALALLLGSDYSQGVYGIGPESASQIVRSIGDKCVLQKFASEGIEGLKTLKGAKKLGQVFKNSNKENMLDHDMALNHGGENNSQKDYNFLQVINAYVKPKCHPADSDIVMRVLAQYPFQRSKLQQICAEFFQWPPEKTDEYILPKIAERDLRRFANLRLTSSEAGANLPLNEIPVKCPVSEIIKCRKVQGRECYEVSWNEMDGLGTSIVPADLLKSACPEKILEFEEKKGRLKKQNAQKRRPKKTLSYSMAELDLKLTNLSLDINLGDHANNHKASDSSEQVFQDESAMDDEAYLHNRDFSCSSHDEQIEWNQNVIKTSENQEGDSMARNEVIDLLSPSPPKQLHASSKCQQSNGGHIEVINLSDSDSDTSPEHKKKAKELRMFLEGIRYDLH 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1140 598 CDD PIN_GEN1 2 198 - -
Lele47g1140 598 FunFam Flap endonuclease GEN-like 1 200 257 - -
Lele47g1140 598 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Lele47g1140 598 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Lele47g1140 598 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Lele47g1140 598 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 205 220 IPR006084 -
Lele47g1140 598 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Lele47g1140 598 Gene3D - 201 271 - -
Lele47g1140 598 SMART HhH_4 202 235 IPR008918 GO:0003677|GO:0003824
Lele47g1140 598 SUPERFAMILY PIN domain-like 3 215 IPR029060 -
Lele47g1140 598 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 562 IPR006084 -
Lele47g1140 598 Gene3D - 381 449 - -
Lele47g1140 598 Gene3D - 2 199 - -
Lele47g1140 598 SMART xpgn3 1 97 IPR006085 GO:0004518
Lele47g1140 598 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 200 362 IPR036279 -
Lele47g1140 598 SUPERFAMILY Chromo domain-like 383 436 IPR016197 -
Lele47g1140 598 Pfam XPG I-region 133 215 IPR006086 GO:0004518
Lele47g1140 598 SMART xpgineu 130 200 IPR006086 GO:0004518
Lele47g1140 598 Pfam XPG N-terminal domain 1 90 IPR006085 GO:0004518
Lele47g1140 598 CDD H3TH_XPG-like 203 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1140 Lele-ChrLele47 16929021 16939010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g1140 1 236 Core DNA Replication Machinery Family AT5G26680 26.923 2.63e-12 67.0