Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1128 ATGAAGACGGAGGTATTTCTGCAACTCCTTTTCTTGTTTGCCTTTGGAATTGGAGCGACTTTCTCAGTTACAGAGTTCCAATCTTCTACTACTACACTTCCTCACGCCGCCGAATCCTTCAATGTCAGCTATATCCAGATGAAGAACGTAGGGAGCTGTCCTTATACGGTGATTATATCTACGAGTTGTTCGTCTCCTGTATATACAAGGGATCAGATCAGTATTTCTTTTGGGGATGCTTATGGCAATCAGATATATGCACCAAGACTGGATGATCCATCTTCAAAAGCATTTGAGCGGTGTTCTTCAGATACATTTCAGATAAATGGTCCATGTGCATATCAGATTTGCTACGTATACCTATACAGAACTGGACCCGATGGCTGGAAGCCACGAAGTGTGAAAATTTACGGTCATAACACAAGGGCTGTTACATTTAACTACAACACATTCATTCCCTCAGATACGTGGTACGGGTTTAATGATTGCAATGCTGCTTCATCTTCAATCCAATTATCTAGCGGGAAATGGTTATTATTTGTTGTTCTAGCTTCCCACGCCAATGTGTCTGATTCTGACCAAGATGGGTTTTCGGACAAGAAGGCGAAGAAGAGGGAGACCAAGAAGCGTAAATCTTCGGATATTGATGGGGTTGGAGAGGAGAGAGAGGGTATTTCGGTGTTAGTTGAGCCCAAAAGTTCGAGGGCGAAGAGTCAGGAGAAGAGAAACAATAATAAAAAGCCGAAATTCGAGGAACCTGACATGGGAGGGGAAGAGGTCGAGAAGAAGAAGAAGGATCCCAATGCAATTTCGAACTTTCCGATATCGGAGTCCTTGCGGGCGAAGTTGAAGGAGAAAGGGATTGAATCTCTATTCCCCATTCAGGCCATGACTTTTGATACCATCCTCGATGGTTCTGATTTGGTCGGTCGGGCTCGCACTGGTCAGGGTAAAACATTGGCTTTTGTGTTGCCCATATTAGAGTCTTTAACCAATGGTCCAGCTAAAGCATCCAGAAAGACTGGCTATGGGAGGTCTCCAAGCGTTCTTGCGCTCTTGCCCACTAGAGAATTGGCCTCTCAGGTGTTCTCAAACTTTGAAGTTTATGGCGAGGCATTGGGTTTGATTTCTTGCTGTTTGTATGGTGGAGCTCCATATCAAGCTCAAGAAATTAAGCTCAAGCGAGGTGTTGACATTGCTATTGGAACACCTGGTCGCATAAAGGACCATATAGAGAGACAAAATATTGACCTAACCCAACTAAGGTTCCGTGTCCTTGATGAGGCAGATGAGATGCTGAGGATGGGTTTTGTTGAAGACGTTGAATTCATTCTTGATAAGAAAACTGTTGATCTTGTTGGGAATGAGAAAATGAAGGCTAGCACCAATGTTAGGCATTTTGTTCTTCCGTGTATGAGTTCTGCCAGATCCCAGCTTATCCCAGACATTATTCGCTGCTATAGCAGGACAATCATATTTACTGAGACGAAGGAATCAGCTTCTGAGCTTGCAGGGCTTTTGCCTGGAGCTCGAGCTCTACATGGTGACATACAACAAGCACAACGCGAGTGCGAACCTCCACGTGATGTAGAAGCCTATATTCATCGTTCTGGCCGCACAGGACGAGCAGGCAACACTGGAGTTGCAGTTATGCTTTATGATCCAAGAAGGTCAAATATATCTAAAATAGAAAGAGATTCAGGTGTGAAATTTGAACACATATCAGCTCCTCAGCCTGCTGATATTGCAAAAGCCGTTGGGGGGGATGCTGCTGAAATGATAAACCAAGTGTCTGATAGTGTGATTCCGGTATTCAAGTTTGCTGCTGAGGAGATTTTGAACAAATCTGGTTTAACAGCCGTTGAATTACTTGCAAAAGCTCTTGCCAAGGCTGTTGGTTATACTGAGATAAAGAAAAGATCACTTCTTACTTCCATGGAGAATTATGTCACATTACTTCTTGAGATTGGAAGACCCATCTACACCCCATTTTTTGCATATGGAATCCTCAGGAGATTTCTGCCTGAGGAGAAGGTTGAGGCAGTGAAGGGTCTTACTCTAACTGCAGATGGAAACGGCTCTGTCTTTGATGTGCCAGCTGAAGATTTAGATGCATATCTTTCTGGTCAGGAAAATGCTGCCAATATAAGCTTAGAAGTATTAGAAGTATTGCCACTTTTGCAAGAAAGAGACCAATCAAAAGGGGGCAGATTTGGTGGCGGCGGTCGTGGTGGGTTCAGTAATAATAAAGGTAGTGGCCGTGGAAACAGATTTTCTAGTGGTAGAGGAGGTGGCAGGAATGGTGGTTTTTTGAATCAGAGGAGCGATGGGTTTTCCGGTGGTTCTAATGGCGGGCGAGGCCGTGGTGCCAACAGAGGGGGAAAGAGATGGTAA 2394 0.4432 MKTEVFLQLLFLFAFGIGATFSVTEFQSSTTTLPHAAESFNVSYIQMKNVGSCPYTVIISTSCSSPVYTRDQISISFGDAYGNQIYAPRLDDPSSKAFERCSSDTFQINGPCAYQICYVYLYRTGPDGWKPRSVKIYGHNTRAVTFNYNTFIPSDTWYGFNDCNAASSSIQLSSGKWLLFVVLASHANVSDSDQDGFSDKKAKKRETKKRKSSDIDGVGEEREGISVLVEPKSSRAKSQEKRNNNKKPKFEEPDMGGEEVEKKKKDPNAISNFPISESLRAKLKEKGIESLFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKASRKTGYGRSPSVLALLPTRELASQVFSNFEVYGEALGLISCCLYGGAPYQAQEIKLKRGVDIAIGTPGRIKDHIERQNIDLTQLRFRVLDEADEMLRMGFVEDVEFILDKKTVDLVGNEKMKASTNVRHFVLPCMSSARSQLIPDIIRCYSRTIIFTETKESASELAGLLPGARALHGDIQQAQRECEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNISKIERDSGVKFEHISAPQPADIAKAVGGDAAEMINQVSDSVIPVFKFAAEEILNKSGLTAVELLAKALAKAVGYTEIKKRSLLTSMENYVTLLLEIGRPIYTPFFAYGILRRFLPEEKVEAVKGLTLTADGNGSVFDVPAEDLDAYLSGQENAANISLEVLEVLPLLQERDQSKGGRFGGGGRGGFSNNKGSGRGNRFSSGRGGGRNGGFLNQRSDGFSGGSNGGRGRGANRGGKRW 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1128 797 FunFam DEAD-box ATP-dependent RNA helicase 7 650 722 - -
Lele47g1128 797 Gene3D - 651 722 - -
Lele47g1128 797 Gene3D PLAT/LH2 domain 52 160 - -
Lele47g1128 797 Pfam Embryo-specific protein 3, (ATS3) 45 163 IPR010417 -
Lele47g1128 797 Pfam DEAD/DEAH box helicase 292 447 IPR011545 GO:0003676|GO:0005524
Lele47g1128 797 Gene3D - 230 482 IPR027417 -
Lele47g1128 797 SUPERFAMILY RNA-binding domain, RBD 637 720 IPR035979 GO:0003676
Lele47g1128 797 SMART ultradead3 287 467 IPR014001 -
Lele47g1128 797 MobiDBLite consensus disorder prediction 191 271 - -
Lele47g1128 797 MobiDBLite consensus disorder prediction 209 268 - -
Lele47g1128 797 CDD PLAT 53 164 - -
Lele47g1128 797 MobiDBLite consensus disorder prediction 732 797 - -
Lele47g1128 797 CDD DEADc 279 447 - -
Lele47g1128 797 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 262 556 IPR027417 -
Lele47g1128 797 Gene3D - 523 650 IPR027417 -
Lele47g1128 797 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 425 433 IPR000629 -
Lele47g1128 797 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 299 515 IPR014001 -
Lele47g1128 797 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 50 160 IPR036392 GO:0005515
Lele47g1128 797 CDD GUCT_RH7_like 640 717 - -
Lele47g1128 797 Pfam GUCT (NUC152) domain 633 728 IPR012562 GO:0003723|GO:0004386|GO:0005524
Lele47g1128 797 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 525 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1128 Lele-ChrLele47 16876977 16884126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g1128 268 586 Eukaryotic Initiation Factors Gene Family AT3G19760 22.564 2.74e-18 86.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele47g1128 47 16876977 16884126 Lele47g1128 47 16876977 16884126 ECH