Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1090 ATGTGGATACTGAGGTCTCGCCTTCTTATTCTTGATAACATGTTTTTGAGGTCTAATGCTTTTGTGATTACAATTCCCATTCAGAAGTCTGAGCAAACTAGCTTCAAGGTTGTATTTGACAAGTTGGTGAAGGAACTTGGGGAACCTGTAGACTTTGAACTTCCAGATTGGTTTAATAAGTGGAAGTCAATGCGCTACACCTCTATAAAACGAAATATATATCACACGAAGAAGGTCAGGAAACGACTTGATGATGATGATGGAATTTTCTGTTCCTGTACTCCCTCAGCTGGATCTTCTAGTGATGCTGTTTTCTACTTGCTCTTCAGGCTGCAAATGTGGGAGCTCCTGTCTGAACAAACCATTCCAGAGTCGACCCGTAAAGAAGATGAAACTGGTCGAGAGAAATGTGGTTCAGGAATTTTGGCGGATGAGGATATTGAACAAGGGGAGTTTGTGATAGAATATGTAGGAGAAGTCATTGATGACAAAGAATGTGAACGTAGGCTTTGGAATATGAAACATCGAGGGGAGAAAAACTTCTACTTATGTGAAATCAATCGAGATATGGTGATTGATGCAACATTCAAGGGAAACAAATCAAGATATATCAACCATAGTTGTTGCCCCAACACTGAGATGCAGAAATGGTTGAGTACTAATTCCTTTTCTCACATGGTCATGATAATTGATGGTGATACGAGAATTGGCATATTTGCAACTCGTGACATTAAAAAGGGGGAACATCTGACATATGATTACCAGTACGAGCAATTGCCTCATTCTTTAATTGCATTTTTACAGTTGAGGATTGCCTCAGATAATTTGATGGCCATTATGGTAAATGCTAAATATATAGCAGGTTTGTTCAGTTTGGTGCAGATCAAGATTGTCATTGTGGTGCTGTTACATGCAGGCTCACAATGGTACAGTGTGGATTTGGATCTGGCTTACCACTTGTGGACTAATAGTGGAATTTTTGTATGGGACAGGTTTATCAAAATGGAGGCTTGCGTACAGATCATGTTTGAGGATGGTACTGTTCGTTTTCTTGACATGTCAGAAGAAGACTGGGAATTTGTAACACAGTGA 1092 0.3965 MWILRSRLLILDNMFLRSNAFVITIPIQKSEQTSFKVVFDKLVKELGEPVDFELPDWFNKWKSMRYTSIKRNIYHTKKVRKRLDDDDGIFCSCTPSAGSSSDAVFYLLFRLQMWELLSEQTIPESTRKEDETGREKCGSGILADEDIEQGEFVIEYVGEVIDDKECERRLWNMKHRGEKNFYLCEINRDMVIDATFKGNKSRYINHSCCPNTEMQKWLSTNSFSHMVMIIDGDTRIGIFATRDIKKGEHLTYDYQYEQLPHSLIAFLQLRIASDNLMAIMVNAKYIAGLFSLVQIKIVIVVLLHAGSQWYSVDLDLAYHLWTNSGIFVWDRFIKMEACVQIMFEDGTVRFLDMSEEDWEFVTQ 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1090 363 SUPERFAMILY SET domain 30 257 IPR046341 -
Lele47g1090 363 SMART set_7 128 261 IPR001214 GO:0005515
Lele47g1090 363 Pfam SET domain 138 254 IPR001214 GO:0005515
Lele47g1090 363 Gene3D SET domain 56 266 IPR046341 -
Lele47g1090 363 ProSiteProfiles SET domain profile. 123 255 IPR001214 GO:0005515
Lele47g1090 363 PANTHER SET DOMAIN PROTEINS 51 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1090 Lele-ChrLele47 16578823 16582797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g1090 135 260 C2H2 Transcription Factor Family AT2G23740 36.170 1.78e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele47g1090 SET 1.1e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g0297 45 2384533 2397818 Lele47g1090 47 16578823 16582797 hybridization
Lele46g0325 46 2182626 2192762 Lele47g1090 47 16578823 16582797 hybridization