Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1088 ATGAGCTCTGCTCAGAAGCTTCTTGACTGCAAGCATTTTGTAAAAGGCTATAGGCCTGAGATGTTGCCAATGACAAGCTTGAATAGGATATGCCTCTCATGTCAGGTAGTAGTAGTTGATGAAACTGATGGAGCTCTTGCAAGTCCTCCCCCAGAATTAATTGTCCTGCCCTGGAATGCCACTCTGTCCGACCTCAAGATTGAAGCATCAAATGCTTTTCAAGATGTATATCTCATGTTTAAAAGATTTCAAGTTGATGAGCTTTTTGGCTGTAGCAGTGCAGATGATTCCACTCCGTTCAAACTCTTGATAGGATCAACGGGATTGGTTCGTGTCCAAGGAAAATGCACGGAGAAGAATGTTTTCCAAAAGGAACGTGGACTTGAGAGGTGGACCGTTGATTGCAGCTGTGGGGCCAAAGATGATGATGGGGAGAGAATGTTGGCATGTGACGTGTGTGGGGTGTGGAGGCACACTAGGTGTTCTAATATTCATGATGGAGATCCTGTCCCTGTGAGGTTTTTTGGCCCAAGATGCCAAAATTTTGAGCTGAAGCCAAATTTAAGTGGACAGTGA 576 0.4479 MSSAQKLLDCKHFVKGYRPEMLPMTSLNRICLSCQVVVVDETDGALASPPPELIVLPWNATLSDLKIEASNAFQDVYLMFKRFQVDELFGCSSADDSTPFKLLIGSTGLVRVQGKCTEKNVFQKERGLERWTVDCSCGAKDDDGERMLACDVCGVWRHTRCSNIHDGDPVPVRFFGPRCQNFELKPNLSGQ 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1088 191 Pfam PHD-finger 135 180 IPR019787 -
Lele47g1088 191 SUPERFAMILY FYVE/PHD zinc finger 128 180 IPR011011 -
Lele47g1088 191 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 2 185 - -
Lele47g1088 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 183 IPR013083 -
Lele47g1088 191 SMART PHD_3 134 180 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1088 Lele-ChrLele47 16571454 16572029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g1088 3 179 PHD Transcription Factor Family AT5G22260 27.513 2.37e-20 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele47g1088 PHD 1.7e-07 CL0390