Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1085 ATGGACTCTATCAACTGTCATCATGTTATTGAACGTAAAAGGCCAATCCCTTCTTCTTCTTCAGCCATTACTGAAGAGCTTATAGAACAGAAAAAGATAATACTAGTAAGGTACAAGGAATGCCTCAGGAACCATGCAGCTTCATTAGGTGGACATGCCATTGATGGTTGTGGTGAGTTCATTTCTTCTTCAGAAGAAGAAGGCTCGCTTGAAGCTTTCAAGTGCTCAGCCTGCAATTGCCACAGAAACTTCCACAGAAAGGAGATTCAATACTGTTATTCAAACTCATCTTCCTCAAATACTACTTTCTGTTATAGCTCTGATAATCAGCATTATCTCACTCCATTGCTTCCAAAAACCTCTCATCAGATCACAAACTCCATCATTCTGGATCATCTTTTGTTATCTCCCAACAAAACTGGCTCAAATCTGTCTGATCAGTCACATGATCATGACAGTAATAAGGATGATGATCATGGGGAAGAAGATCAGAAAGAGGCTGGGAAACCAGAAGATGAGAAGGTGGTGATGATGAATAAGAAGAGGTTTAGGACTAAGTTCAGTGCAGAACAGAAAGAGAAAATGGTGAATTTTGCAGAGAAAGTAGGGTGGAAGTTGCAGAAGCTTGAAGAATCTGTGGTGCAGCAGTTTTGTGAAGAGATAGGAATCAAGAGGAGAGTTCTCAGAGTGTGGATGCACAATAACAAGAATACTTATGCTAAGAACTTGTGA 732 0.4003 MDSINCHHVIERKRPIPSSSSAITEELIEQKKIILVRYKECLRNHAASLGGHAIDGCGEFISSSEEEGSLEAFKCSACNCHRNFHRKEIQYCYSNSSSSNTTFCYSSDNQHYLTPLLPKTSHQITNSIILDHLLLSPNKTGSNLSDQSHDHDSNKDDDHGEEDQKEAGKPEDEKVVMMNKKRFRTKFSAEQKEKMVNFAEKVGWKLQKLEESVVQQFCEEIGIKRRVLRVWMHNNKNTYAKNL 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1085 243 MobiDBLite consensus disorder prediction 140 172 - -
Lele47g1085 243 Pfam ZF-HD protein dimerisation region 36 89 IPR006456 -
Lele47g1085 243 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 38 88 IPR006456 -
Lele47g1085 243 Gene3D - 162 241 - -
Lele47g1085 243 FunFam Zinc-finger homeodomain protein 2 167 241 - -
Lele47g1085 243 SUPERFAMILY Homeodomain-like 176 241 IPR009057 -
Lele47g1085 243 MobiDBLite consensus disorder prediction 145 172 - -
Lele47g1085 243 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 37 89 IPR006456 -
Lele47g1085 243 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 180 237 IPR006455 -
Lele47g1085 243 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 26 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1085 Lele-ChrLele47 16558237 16558968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g1085 28 241 ZF-HD Transcription Factor Family AT2G02540 47.032 1.30e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele47g1085 ZF-HD_dimer 3.1e-28 No_clan