Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1058 ATGACATGTGATCACATAATTCCCTTTTCCCACTTTGTTCCCAGGCAGGAGCTTTGTCCAGACAAGAGGATGTTATTCTATCCCGAGCTTCCAAAAATAATTGGTTCAGACTCTCTCGAGCTTCGAATAAGATATGCTGATAAAGGATTTACAGATAGAATCACCGCTTGCTATATTACTCTGCCAACTCCCCTCCCAATACTGAACTTGCTCGTTGGGTCGCCAGATTGTACAAGCAAACACAAAGGACTATATTATACTGTTGCCCTTTTGTGGTCTTCGTTTGGAGTTTATGTGAAATGTCCCTTAGTTAAACAGAACTCACAGAAGCTTCAAAACCCTCTTCTCTCCGCTCACCAAAAACAAAAAGAAGGAAAAGAAAACTCTTCTCTCACCTGGTGGACATCTGACATTCGTGGAAAGCTCAAGCGTATAACCGCGGGGAGTGAAAATGAGAAAGAAGCTCCTGATGGCAGCGAGAGGAGGCCTCTCCTTGTCCAATCACAACCGCAGATGCATTCGCTCGTCACATCCCAGACCGTCCAAATGGGTTCTGTTGGGCAGTCAAATACTCAGTGGCGAGGATGGTCATATGCTGCCTCTGTACCTTCTGATGAGCCAAATTCTCAGAAACGTCAAAGGCTTTCAAGAGATGAAAGGAGAGCCAGGGTGGAATCTTTTGTGAACAAGTACAGAGAAACAAATGATGGGAAATTTCCAAATGCTAAGCATACTATGAAAGAAGTTGGTGGCAATTACTATGTTGTTCGAGAAATCATTCAGGAATTAAAATACAATTCCAAAATGAATTCTTCGAACAACATGGGTAAGAATTTGGTGGGAAAAGATAACTTCAGTGTTAGTAAACTTGGGACCACTGAAAGTGTAAAGGTTCCCTCAGATGCTATTGAGACTGCAAAAGACAGGCCTATCAAAGATGACTGTCAACTGGCAATTTCGGATGACATTGATGCTAGGAATGAGCATCTGGAAGATAAGAGAGGGCCACAGACTACCTCATATGACAGGAGCTTGTCTGGAGAAGCTGTAATCACTTCTTCTGACACTAATTTCATTGCTGCTGACAGTGATCAGTCGCAAAGAGAAGCTGAAACTTCCAAATCGAACCAGTGGACACCAATTGATGTCAAGACTGAGGAAGCTGAGTCTAGTTATTCTGATTCTGTTGTTTCAGAAACTCATCCAATGAAAGTAGCGGTACATGACATTTCTGCTCCTTGTAGTGAAATGTCTGGAAGTAGTCAGAGCAAAGGTCTCAATTCTGAGTTATCTGATACGGAAAATCATATGGTAATGAAGAAAACAAACATAGAGAAAGCTGAATATGAAAGCAGAGATCATGATGCATTGAAAGACCTTCCCAGTATTGATGATCCAAAGCATACAATGGAGCAAGTTCATGGAACCTCAGACATGAATGAGTCAAAAATCTTTTATTTAGGTGCTCAAGTTGAAAGCTCCTTTTTATTAAGAATGGCATTTGTACAGGAGACTCTACTCTCTTGCTGTAGGGAAGCAAAATTGCTTTGCTCATGCAGATGGTTTCATGTGTTACAAACCATTGGAAGGGATATAGATTGGATATTGGCTTGCTGTACTGGGTGGCTGATGCAATCAGATGCAAGAGGTTGCTGGAGAGCGTGGTGGTTACCTTCATGGGCGAGGGGGTATCACTTTAGCTTGAATGCTTTTGTTTTTGCATTTGTTACTGCACTTGGTCTTACTTGTTGCCATTATGTTACCATAGTTGCTTCGATCTCCTTTTTAAATTTTATATATGCAGCCTTGGACAGTGATGATCTACTCTATCTCAAGGAGCAGATGGAAGCTGAGGAGGATGCTGAACGCCTCCTGCGTCGTACTGAAAAGCGAGCTTTTGCGGCATTTAAGATATCCTTTTCTGGAACTATTTTTGCTAGAAAGCTAAGGAATATGTCCTGTCATTCAATATATATGATTTCTCCCCTTCTGGTCCTAGCTGCAAACTTAGCAGATTCTACCCCTGCATCAGTACCCTTATCTCTTCGTGTTGAGCAAAAACCGAAGAGCGGGATAAGTTTTGCTGGTCTTCTCCACATTGTTAATGATTTACTCTGCAATTGGATGGTTGAAATGCCGCTTTCACTAACCCCTCAAGTCATCACCTGCAAAGCTGCGGTGGCATATGGAGCTGGAGAGCCGTTGGTAGTGGAGGAAGTTGAAGTGAGCCCTCCGCAACCTTCGGAGATTCGGATTAAAGTTGTCTCCACCTCTCTCTGTCGCAGCGATCTCTCTGCTTGGGAATCGCAAACCATATTTCCTCGAATATTTGGCCATGAAGCGGCAGGGATTGTTGAGAGTGTGGGCGAGGGAGTGACTGAATTCAGGGAGGGAGACCATGTGCTAACTGTCTTCATTGGAGAATGCATGACTTGCAGGCTGTGCAAATCTGGAAAAACAAACATATGTCAAGTTCTGGGATTGGAAAGAAGAGGTTTAATGCATAGTGATAAGAAGACACGTTTCTCAGTAAAAGGGAAGCCTATTTATCACTATTGTGCTGTTTCAAGTTTCAGTGAATATACAGTAGTGCATTCTGGGTGTGCAGTCAAAATCAGCCCAAATGCTCCTCTTGAGAAAATATGCCTTTTGAGCTGTGGTGTTGCTGCAGGTCTGGGTGCTGCATGGAATGTTGCTAATGTATCAGAAGGATCAACTGTGGTGATATTTGGACTTGGAACTGTCGGCCTTTCTGTTGCACAAGGTGCTAAACTTAGGGGGGCATCTCGAATAATCGGTGTGGACAACAACCCTCAGAAGTGTGAAAATGCTAAAGCTTTTGGAGTTACAGAAGCTGTTAACCCAAATTCCTTTGATGAACCTATCGCTCAGGTTATTAAGCGCATTTCCAATGGTGGAGCTGATTTCTCTTTCGAATGCGTAGGTGATACCGATATGATAACCACTGCATTGCAGTCATGCTGTGATGGATGGGGTTTGACTGTTACCCTTGGTGTGCCAAAAGTGAAGCCTGAGATGTCAGCTCATTATGGACTATTATTAATGGGAAGAACATTGAAAGGATCTTTGTATGGAGGATGGAAACCCAAATCTGATTTGCCTTCATTGGTAGACAAGTATGTGAATAAGGAAATCCAGATTGATGATTACATAACACACGATTTGCCATTTGAGGACATTAACAAAGCTTTCAATCTCATGAGAGAAGGAAAGTGTCTGCGTTGTGTTATCCACATGCCCAGGTAA 3267 0.4273 MTCDHIIPFSHFVPRQELCPDKRMLFYPELPKIIGSDSLELRIRYADKGFTDRITACYITLPTPLPILNLLVGSPDCTSKHKGLYYTVALLWSSFGVYVKCPLVKQNSQKLQNPLLSAHQKQKEGKENSSLTWWTSDIRGKLKRITAGSENEKEAPDGSERRPLLVQSQPQMHSLVTSQTVQMGSVGQSNTQWRGWSYAASVPSDEPNSQKRQRLSRDERRARVESFVNKYRETNDGKFPNAKHTMKEVGGNYYVVREIIQELKYNSKMNSSNNMGKNLVGKDNFSVSKLGTTESVKVPSDAIETAKDRPIKDDCQLAISDDIDARNEHLEDKRGPQTTSYDRSLSGEAVITSSDTNFIAADSDQSQREAETSKSNQWTPIDVKTEEAESSYSDSVVSETHPMKVAVHDISAPCSEMSGSSQSKGLNSELSDTENHMVMKKTNIEKAEYESRDHDALKDLPSIDDPKHTMEQVHGTSDMNESKIFYLGAQVESSFLLRMAFVQETLLSCCREAKLLCSCRWFHVLQTIGRDIDWILACCTGWLMQSDARGCWRAWWLPSWARGYHFSLNAFVFAFVTALGLTCCHYVTIVASISFLNFIYAALDSDDLLYLKEQMEAEEDAERLLRRTEKRAFAAFKISFSGTIFARKLRNMSCHSIYMISPLLVLAANLADSTPASVPLSLRVEQKPKSGISFAGLLHIVNDLLCNWMVEMPLSLTPQVITCKAAVAYGAGEPLVVEEVEVSPPQPSEIRIKVVSTSLCRSDLSAWESQTIFPRIFGHEAAGIVESVGEGVTEFREGDHVLTVFIGECMTCRLCKSGKTNICQVLGLERRGLMHSDKKTRFSVKGKPIYHYCAVSSFSEYTVVHSGCAVKISPNAPLEKICLLSCGVAAGLGAAWNVANVSEGSTVVIFGLGTVGLSVAQGAKLRGASRIIGVDNNPQKCENAKAFGVTEAVNPNSFDEPIAQVIKRISNGGADFSFECVGDTDMITTALQSCCDGWGLTVTLGVPKVKPEMSAHYGLLLMGRTLKGSLYGGWKPKSDLPSLVDKYVNKEIQIDDYITHDLPFEDINKAFNLMREGKCLRCVIHMPR 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1058 1088 SUPERFAMILY GroES-like 1037 1085 IPR011032 -
Lele47g1058 1088 MobiDBLite consensus disorder prediction 326 347 - -
Lele47g1058 1088 Gene3D - 726 1081 - -
Lele47g1058 1088 Gene3D - 891 1029 - -
Lele47g1058 1088 Pfam Zinc-binding dehydrogenase 915 1040 IPR013149 -
Lele47g1058 1088 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 778 792 IPR002328 GO:0008270|GO:0016491
Lele47g1058 1088 MobiDBLite consensus disorder prediction 362 390 - -
Lele47g1058 1088 SUPERFAMILY GroES-like 718 896 IPR011032 -
Lele47g1058 1088 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 877 1049 IPR036291 -
Lele47g1058 1088 FunFam Alcohol dehydrogenase 6 726 903 - -
Lele47g1058 1088 FunFam S-(hydroxymethyl)glutathione dehydrogenase 891 1029 - -
Lele47g1058 1088 PANTHER ALCOHOL DEHYDROGENASE 719 1084 - -
Lele47g1058 1088 Coils Coil 611 631 - -
Lele47g1058 1088 Pfam Alcohol dehydrogenase GroES-like domain 748 871 IPR013154 -
Lele47g1058 1088 CDD alcohol_DH_plants 721 1085 - -
Lele47g1058 1088 MobiDBLite consensus disorder prediction 199 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1058 Lele-ChrLele47 16325179 16340614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g1058 749 886 Monolignol Biosynthesis Gene Families AT4G37990 26.056 8.34e-10 60.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g0332 45 2686765 2690863 Lele47g1058 47 16325179 16340614 hybridization
Lele46g0357 46 2423298 2424220 Lele47g1058 47 16325179 16340614 hybridization