Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1029 ATGGGGCAGATGACTATTCATTCAGAGTCTGTTTCTCCTGGCCCACCCTCAAGTAAATCAGTGAGGTTTCCCCTTAGGCCTGGAAAGGGTAGCTATGGCACCAAGTGTGTTGTTAAGGCTAACCACTTCTTTGCAGAGTTACCTAATAAAGATTTGCACCAGTATGATGTCACTATCACTCCAGAAGTGACATCAAGGGGTGTAAACCGTGCTGTTATGGAGCAGCTGGTGAGGCTTTATCGAGAGTCTCATTTGGGTAAGAGACTTCCCGTGTATGATGGGCGCAAGAGCCTTTACACTGCTGGTCCTCTTCCTTTCCTTTCAAAGAATTTTGAAATCGCTCTCCTTGACGAAGATGATGGATCGGGAGGGCCAAGAAGAGAGAGGAACTTCAGAGTTGTGATAAAATTGGCTGTCCGGGTAGATCTACATCCTCTAGGACTCTTCCTGCAGGGAAGGCAGACTGATGCTCCTCAAGAAGCTCTTCAGATTCTTGACATCGTACTGCGTGAACTACCTACCTCTAGGTATTGTCCTGTGGGGAGATCATTTTATTCACCAGATCTGGGTAGAAGGCAACCATTAGGTGATGGTTTGGAAAGTTGGCGTGGCTTCTATCAAAGTATTCGTCCTACTCAAATGGGATTATCTCTAAATATTGATATGTCCTCAAGTGCATTTTTTGAACCTTTGCCTGTAATAGAATTTGTTACCAAGTTGCTCAATCGGGATGTCACCGCCCGCCCATTGTCTGATGCAGATCGTGTAATGATAAAGAAAGCTCTTCGGGGTGTCAAAGTTGAAGTGACACACCGTGGAAATATGAGAAGAAGATATCGCATCTCTGGTCTGACTTCACAGACAACCCGAGAGCTAACGTTTCCCGTTGATGCAAGTGGAACACTGAAGTCTGTTGTTGAGTATTTTTCGGAAACATATGGATTTGTCATTCAACATACCCAATGGCCTTGCTTGCAAGGGGGCAGTGCGCAGAGACCAAACTATTTACCAATGGAGGTTTGTAAGATAGTAGAAGGTCAAAGGTACTCAAAGAGATTGAATGATAAGCAGATTACTGCTTTGCTCAAAGTCACATGCCAGCGTCCTGTTGAAAGGGAGCTTGATATTATGCAGACAGTTCATCATAATGCTTACCGTGATGATCCTTATGCTGAAGAGTTTGGGATTAAAGTCAATGAAAAGATGGCTCAAGTTGAAGCTCGCATTCTTCCTGCACCTCGGCTTAAATATCATGATACAGGTAGAGAAAGGGATTGTCTACCTCAAGTTGGCCAATGGAATATGATGAATAAGAAAATGGTCAATGGTGGGACAGTCAACCACTGGATCTGCATCAACTTTTCCAGAAATGTTCAAGATAGTGTTGCAAGTGGGTTTTGTTATGAACTTGCTCAAATGTGTTGTATATCTGGCATGGCATTCAATTCTGAGCCAGTGCTTCCCGCACTTAGTGGCCGTCCTGATTTGGTGGATAAGGTTCTCAAAATTCGGTATCATGATGCAAAAACCAAACTGATGGGGAAGGAGCTTGATCTTCTGATTGCTATTTTGCCTGATAAAAATGGTTCTCTTTATGGTGACCTGAAACGTATATGTGAGACAGATCTAGGGGTTGCTTCTCAGTGCTGTTTGACTAAGCATGTCTATAAAATGAGCAAGCAGTATCTTGCAAATGTTGCCTTGAAAATTAATGCAAAAGTAGGTGGGAGGAACACAGTGCTTGTTGATGCACTTTCACGGCGTATACCTCTAGTTAGCGACCGACCAACAATTATTTTTGGCGCTGATGTTACTCATCCACATCCTGGAGAGGATTCAAGTCCATCCATAGCAGCTGTTGTGGCCTCTCAAGATTGGCCTGAAATCACAAAGTATGCTGGTTTGGTGCGTGCTCAAGCACATAGACAGGAGCTCATTGAAGACCTCTTTGAAAAATGGCAGGATCCTGTCAGGGGAACAGTAACTGGTGGAATGATTAAGGAGCTTCTTATATCTTTCCGGAGGGCCACTGGGCACAAGCCGCAGCGCATTATATTTTACAGGGATGGTGTGAGTGAGGGGCAGTTCTCTCAAGTTTTACTGTCTGAACTTGATGCTATCCGCAAGGCTTGTGAGTCCCTAGAACCTAATTATCAGCCTCCTGTCACATTTGTGGTGGTTCAGAAGCGCCATCATACTAGACTCTTTGCCAGCAACCATCGTGACAGGAGTTCTGTTGACCGGAGCGGGAACATATTGCCTGGCACTGTTGTAGACTCTAAGATTTGTCATCCTACTGAGTTCGACTTTTATCTCTGTAGCCATGCTGGGATTCAGGGAACAAGCCGTCCAGCTCATTACCACGTGTTATGGGATGAAAACAATTTTACAGCTGATACACTGCAAACATTGACAAACAACCTTTGTTACACTTATGCTAGATGCACTCGTTCTGTTTCAATTGTGCCGCCTGCATATTATGCTCATTTGGCTGCTTTCCGAGCTCGATTTTATATGGAACCTGATACGTCAGAGAGTGAATCCATGACCAGTGGTGGTGCTGCTGCCCGTGGAGTTGGTGCAGTGCGGAGCACTCGACCGTCTGGTGGTGGTGCTACCGTTAGGCCTCTTCCAGCGCTTAAGGAGAATGTCAAGAGGGTTATGTTCTATTGTTAG 2676 0.4488 MGQMTIHSESVSPGPPSSKSVRFPLRPGKGSYGTKCVVKANHFFAELPNKDLHQYDVTITPEVTSRGVNRAVMEQLVRLYRESHLGKRLPVYDGRKSLYTAGPLPFLSKNFEIALLDEDDGSGGPRRERNFRVVIKLAVRVDLHPLGLFLQGRQTDAPQEALQILDIVLRELPTSRYCPVGRSFYSPDLGRRQPLGDGLESWRGFYQSIRPTQMGLSLNIDMSSSAFFEPLPVIEFVTKLLNRDVTARPLSDADRVMIKKALRGVKVEVTHRGNMRRRYRISGLTSQTTRELTFPVDASGTLKSVVEYFSETYGFVIQHTQWPCLQGGSAQRPNYLPMEVCKIVEGQRYSKRLNDKQITALLKVTCQRPVERELDIMQTVHHNAYRDDPYAEEFGIKVNEKMAQVEARILPAPRLKYHDTGRERDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRNVQDSVASGFCYELAQMCCISGMAFNSEPVLPALSGRPDLVDKVLKIRYHDAKTKLMGKELDLLIAILPDKNGSLYGDLKRICETDLGVASQCCLTKHVYKMSKQYLANVALKINAKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVRAQAHRQELIEDLFEKWQDPVRGTVTGGMIKELLISFRRATGHKPQRIIFYRDGVSEGQFSQVLLSELDAIRKACESLEPNYQPPVTFVVVQKRHHTRLFASNHRDRSSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADTLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPDTSESESMTSGGAAARGVGAVRSTRPSGGGATVRPLPALKENVKRVMFYC 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1029 891 Gene3D - 588 891 IPR036397 GO:0003676
Lele47g1029 891 Pfam Argonaute linker 1 domain 179 228 IPR014811 -
Lele47g1029 891 SUPERFAMILY PAZ domain 37 374 IPR036085 GO:0005515
Lele47g1029 891 MobiDBLite consensus disorder prediction 1 25 - -
Lele47g1029 891 Pfam PAZ domain 235 361 IPR003100 GO:0005515
Lele47g1029 891 FunFam Argonaute 10 409 582 - -
Lele47g1029 891 Pfam N-terminal domain of argonaute 34 169 IPR032474 -
Lele47g1029 891 Gene3D paz domain 225 349 - -
Lele47g1029 891 SMART DUF1785_2 178 230 IPR014811 -
Lele47g1029 891 Pfam Piwi domain 520 839 IPR003165 GO:0003676
Lele47g1029 891 Pfam Mid domain of argonaute 428 488 IPR032473 -
Lele47g1029 891 CDD Piwi_ago-like 389 839 IPR045246 -
Lele47g1029 891 Pfam Argonaute linker 2 domain 371 417 IPR032472 -
Lele47g1029 891 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 30 841 - -
Lele47g1029 891 MobiDBLite consensus disorder prediction 848 874 - -
Lele47g1029 891 FunFam Protein argonaute-2 224 350 - -
Lele47g1029 891 SMART Piwi_a_2 519 840 IPR003165 GO:0003676
Lele47g1029 891 CDD PAZ_argonaute_like 230 344 - -
Lele47g1029 891 SMART PAZ_2_a_3 235 367 IPR003100 GO:0005515
Lele47g1029 891 Gene3D - 409 582 - -
Lele47g1029 891 SUPERFAMILY Ribonuclease H-like 506 841 IPR012337 -
Lele47g1029 891 MobiDBLite consensus disorder prediction 1 17 - -
Lele47g1029 891 FunFam protein argonaute 10-like 588 891 - -
Lele47g1029 891 ProSiteProfiles Piwi domain profile. 519 840 IPR003165 GO:0003676
Lele47g1029 891 ProSiteProfiles PAZ domain profile. 231 345 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1029 Lele-ChrLele47 16159424 16164784 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g1029 8 891 Eukaryotic Initiation Factors Gene Family AT1G48410 80.947 0.0 1503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g0365 45 2865841 2873181 Lele47g1029 47 16159424 16164784 hybridization
Lele46g0394 46 2625478 2645679 Lele47g1029 47 16159424 16164784 hybridization