Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1026 ATGCAGGACCAAATAGAAGGTACAAAGTTGAACAGCTCTGGCAATGCTAGTAATAACCATTCCAACAATGGCACAAAATATGAAGAAGTTGCCCTGTTGAAGGATCAAACTCCTAATGGATACAACCATACTCCTAAGGTGAGGAAACCGTATACCATTTCCAAGCAAAGAGAAAAGTGGACAGAGGAAGAGCATCAGAAGTTCCTAGAAGCTTTGAAATTGTATGGTCGTGGTTGGCGGCAAATTGAAGAACACATAGGTACAAAGACTGCAGTTCAGATTCGAAGCCATGCCCAGAAGTTCTTCTCTAAGGTTGCTCGGGAATCTGATGGCACTGCTGAATGTTCTATAAAACCAAGTGATATACCTCCTCCTCGGCCAAAGAGGAAACCTCTACATCCATATCCCCGTAAATCAGTTGATTCCGGCAAACACCTATCCATAGCAAATGAATCGGAAAGATCTCCATCCCCAAACCTGGCTGTTGCAGAGAAAGACACCCATTCTCCGACCTCTGTGCTCTCTGCATTTAATTCAGAAGTATTTGGGTCAGCATCTCCAGAGCAGCCTAACAGATGTCAATCACCTAATTCTTGTGCCACTGACGTTCACTCATCCTACTCATCACTATCACTCGTTGAAAAGGAAAACAATTGCATGACATTCGACTCATCTGTGGAGGAAGAGAAAGGATCTCTTACTTCACTCTCTTTATCTGCTGGTTTGAGCTTACCTGTGTTCTCAACGAAGTCTGAGTTGAGCTCCATGGATACTGAATCTTCTGTTGAAGATGCTACCAACGTGGCCCACGTTACAAGTTTTAAGCTGTTTGGAAGAGCTGTTCAGATGGTACATAATCGGAAGTCCCTTGATGTAGATGGGGAGAATATCAAGGCAATTGCAAGCAAGTCTGATTATGTTGAGAACGAAAAGCTTGGCCAAACATGGCCATCCAGCCAACTAGATTCACAATTATCACTAGGTATGTGTAGTAGTACTACAACCCTTGAGGGATCTGTGGCAAATTGCTGA 1032 0.4351 MQDQIEGTKLNSSGNASNNHSNNGTKYEEVALLKDQTPNGYNHTPKVRKPYTISKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVARESDGTAECSIKPSDIPPPRPKRKPLHPYPRKSVDSGKHLSIANESERSPSPNLAVAEKDTHSPTSVLSAFNSEVFGSASPEQPNRCQSPNSCATDVHSSYSSLSLVEKENNCMTFDSSVEEEKGSLTSLSLSAGLSLPVFSTKSELSSMDTESSVEDATNVAHVTSFKLFGRAVQMVHNRKSLDVDGENIKAIASKSDYVENEKLGQTWPSSQLDSQLSLGMCSSTTTLEGSVANC 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1026 343 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 55 104 IPR006447 GO:0003677
Lele47g1026 343 MobiDBLite consensus disorder prediction 145 169 - -
Lele47g1026 343 MobiDBLite consensus disorder prediction 1 30 - -
Lele47g1026 343 SMART sant 56 104 IPR001005 -
Lele47g1026 343 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Lele47g1026 343 SUPERFAMILY Homeodomain-like 51 106 IPR009057 -
Lele47g1026 343 CDD SANT 59 102 IPR001005 -
Lele47g1026 343 Pfam Myb-like DNA-binding domain 57 100 IPR001005 -
Lele47g1026 343 ProSiteProfiles SANT domain profile. 55 106 IPR017884 -
Lele47g1026 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 106 IPR017930 -
Lele47g1026 343 Gene3D - 59 106 - -
Lele47g1026 343 PANTHER SWI/SNF COMPLEX-RELATED 18 269 - -
Lele47g1026 343 MobiDBLite consensus disorder prediction 108 169 - -
Lele47g1026 343 MobiDBLite consensus disorder prediction 123 140 - -
Lele47g1026 343 FunFam protein REVEILLE 6 isoform X1 59 107 - -
Lele47g1026 343 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1026 Lele-ChrLele47 16148634 16150180 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele47g1026 Myb_DNA-binding 1e-13 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g0369 45 2896174 2896672 Lele47g1026 47 16148634 16150180 hybridization
Lele46g0395 46 2645835 2648283 Lele47g1026 47 16148634 16150180 hybridization