LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele47g1022	ATGTCACTAGCAGTGGGGTCCGTCAGCAAGGCTTTGTTCGACCTGTGTGGATTCGTTGAAAAATATTGTTTTGTGGATGGTGGATTCCAAGGCAAGGCTGTCAACTGGTACAGTTTTCGCAGGCATACAAGCAGCTTACCTATCCATGGTGAAGCTTCGGCAAAAGCGGCTCTGTACAGGGACAGATTTCTGTTACTGTTCCAGAGGCTCTCTCGTGATCAGCATTTTGCAAAGCCGGCTTTTGATTCTAAGTGTTCGCATTTTGGAAGCTGTGAGATATCTCCCATCCAATCTCTGGTTGGGCAAACAAGTAGAAGATGGATCATGGGAGTGATATCACAGCTGGAGGATGGGCATTTTTATTTAGAAGACCTAACTGCTTCGGTTGAAATCAATTTGTCTGCTGCTATATCCTTTTGTTATCTGAGAGTGATATGGGATATCAGACTAGCAGAGATGGAAAAGAGAGCAGTCAATGACATGTTCGTTATACTGTCTGATATCTGGCTTGACAGTGATGAGGCTATGGGAAAGCTGCAGACTGCACTGGATGGTTTTGAGAGTGTGGAAGTAGTCCTTTATTTGTTTTCATGGGAAACTTCTCATCCATGCAACCTTTCTTTTCATTCTTACTCAAGCCTCCGGTTGCAGTTTGGTAAGCTAGGGCAAATGATTGCCTCCCATCCACGGCTAATAGAGAAAAGTCGATTTTTGTTCATTCCGGGTCCTGATGATCCTGGTCCTTCAACAGTTCTACCTAGATGTGCTCTGCCAAAATATTTAACTGAGGAGCTCCAGAATCACATAATTTTGGGAGATGGAAGAGAGCAAAAAGCGTTCAAGTACACAGGAATCACTTGTTTTAATACTGGTTCCTACTCAATTGACAGCACCTTTGTAGCATACCGACCATGCTTTCAAGAATGCAAATCTGCCGTTTTCTCAGCTGAGCTAAACATGTTGCGCACAGCTACAGGTTCTCTTATTGATGGTTTGTCTAAATTAGGGAGAATGCAAGCTGCGCAAGATCTTTTTATTGAGATGCTTTACCATGGTCATACTCCTGATATAATCACCTATAATATTTTATTAGATGCATTTTGCAAAACCCAGAATCTTGACATGGGGGTTGCAATGATCAAGAAAGGTGTTGGCAGAGGAATTTGGCCTAGTGCATACACATACAGTATACTTCTTGATGGTTTGTGTAAAAGTGGTAAACTAAATACTGCACAAGAGATTTTTCAGTACCTTTCAATGAAAGGCCGTCTTTTAAATGTCTGCACTTATAACATTATGATCAATGGCCTTTGTAGAGAAGGCTTGGTTGATGAAGCTATGGCATTTCTCCCAGAAATGAAAGAGAATGGCTGTCACCCTGATAAAATTACATGCAATATACTTATGCAAGCTCTTTTGGAAAAAAGAGAGAATGATGAGGCTGAAAAGTTTCTTCATGAAATGATTAGTGGTGGTCTTCTATAA	1485	0.4135	MSLAVGSVSKALFDLCGFVEKYCFVDGGFQGKAVNWYSFRRHTSSLPIHGEASAKAALYRDRFLLLFQRLSRDQHFAKPAFDSKCSHFGSCEISPIQSLVGQTSRRWIMGVISQLEDGHFYLEDLTASVEINLSAAISFCYLRVIWDIRLAEMEKRAVNDMFVILSDIWLDSDEAMGKLQTALDGFESVEVVLYLFSWETSHPCNLSFHSYSSLRLQFGKLGQMIASHPRLIEKSRFLFIPGPDDPGPSTVLPRCALPKYLTEELQNHIILGDGREQKAFKYTGITCFNTGSYSIDSTFVAYRPCFQECKSAVFSAELNMLRTATGSLIDGLSKLGRMQAAQDLFIEMLYHGHTPDIITYNILLDAFCKTQNLDMGVAMIKKGVGRGIWPSAYTYSILLDGLCKSGKLNTAQEIFQYLSMKGRLLNVCTYNIMINGLCREGLVDEAMAFLPEMKENGCHPDKITCNILMQALLEKRENDEAEKFLHEMISGGLL	494

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele47g1022	494	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	391	425	IPR002885	-
	Lele47g1022	494	Gene3D	Tetratricopeptide repeat domain	422	490	IPR011990	GO:0005515
	Lele47g1022	494	Gene3D	Tetratricopeptide repeat domain	322	421	IPR011990	GO:0005515
	Lele47g1022	494	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	321	355	IPR002885	-
	Lele47g1022	494	Pfam	PPR repeat family	426	472	IPR002885	-
	Lele47g1022	494	Pfam	PPR repeat family	327	369	IPR002885	-
	Lele47g1022	494	TIGRFAM	PPR: pentatricopeptide repeat domain	393	422	IPR002885	-
	Lele47g1022	494	TIGRFAM	PPR: pentatricopeptide repeat domain	358	381	IPR002885	-
	Lele47g1022	494	TIGRFAM	PPR: pentatricopeptide repeat domain	428	461	IPR002885	-
	Lele47g1022	494	TIGRFAM	PPR: pentatricopeptide repeat domain	463	493	IPR002885	-
	Lele47g1022	494	PANTHER	DNA POLYMERASE EPSILON SUBUNIT B	268	311	IPR016266	GO:0003677\|GO:0006261\|GO:0008622
	Lele47g1022	494	Pfam	DNA polymerase alpha/epsilon subunit B	162	267	IPR007185	GO:0003677\|GO:0006260
	Lele47g1022	494	Pfam	PPR repeat	387	416	IPR002885	-
	Lele47g1022	494	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	356	390	IPR002885	-
	Lele47g1022	494	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	426	460	IPR002885	-
	Lele47g1022	494	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	461	494	IPR002885	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele47g1022	Lele-ChrLele47	16111858	16122601	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele47g1022	39	269	Core DNA Replication Machinery Family	AT5G22110	55.986	3.51e-96	298

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele45g0374	45	2929844	2933036	Lele47g1022	47	16111858	16122601	hybridization
	Lele46g0398	46	2671892	2676720	Lele47g1022	47	16111858	16122601	hybridization