Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1017 ATGTTAGCCAATAACTCTCTCTCTTCAGCTCCTATTTCTGAGACCTTTCCTTGCGGAGATAATAATGGCGGTATCACCACGAATAAAAGAAAGAGAAGACCCGCAGGAACTCCAGATCCGGATGCGGAGGTGGTGTCGCTCTCTCCGAAGACGTTACTGGAATCGGACCGGTACGTATGTGAGATCTGTAATCAGGGGTTTCAGAGGGACCAGAACTTGCAGATGCACCGGCGGAGGCACAAGGTGCCGTGGAAGTTGCTGAAGAGGGAGACGCCGGCGGCGAGGAAGCGCGTGTTCGTTTGCCCGGAGCCGACGTGCTTGCACCACGACCCGTGCCACGCCCTGGGCGATCTCGTCGGAATAAAGAAACACTTCAGAAGAAAACACAGTAACCACAAACAATGGGTCTGTGAACGCTGCTCTAAAGGCTACGCAGTTCAATCTGATTACAAAGCTCATCTTAAAACCTGTGGTACCAGAGGCCACTCTTGCGATTGCGGTCGCGTCTTCTCCAGGGTGGAGAGCTTTATTGAACACCAAGATGCTTGTAACATGGGGCGGCTCCGGTCGTCGGAAACACAGGCGCTACAGCGGCAGACACAGACGGCGTGCTTGTCCCGAACGGCTTCGAGCCCGAGTCCGTCTAGCGAAACCAATTTCAATATCGGTCCGAACTGGAATAATAACGGTCTTGTTGTATTGCCTAAGCCGGCGAGTGAACCGTTATTGTTGAAACCTACCATTGCTGCTGCTGCTACCCCTACAACGGTTGCTCATCATCTTCATTATGAAACCTCATCCAACAACAAGAACAAGTATAAACTGTGTCCGAACTTGGATCTTCGTCTCTCTACCTCTAGTTCGATTATTCCCATTGATACTTCAACAACAACACCTAAGAGAGATGAAACCCGATCATCAAACCACTTTCGGATTTCGATTTGCGACAAAAATATTGAATCCAATACCTGCTTCAATATTAATCATAATCGCAGGAATTCACCCAAGGAGAGCTGTAACAGCAGCGATAAACCACAAGGTAGTAATGAAGCTGGGATGATGAGGCTCGTTCATCATGAAGAGGAAGCACGTGAGCAGTTAAGGTTAGCCATGGCGGAGAAGGCATATGCAGAGGAAGCAAGAAAGCAAGCGAAACGGCAGATAGAAGTTGCAGAGAAGGAATTTGCTAATGCAAAGAGAATCAGACAAGAAGCACAAGCTGAACTTGACAAAGCTTACGCCGTTAAAGAACATGCCATTAAACAGATCAACTCCCTCATGCTTCAAATCACTTGTCATGCTTGTAAACGACAGTTCGGAGCCCAAACGATGCCAATAATGTCGACGGTTCCTCCGCCGGCGGCGGACGAGAACTCATTGGTAGTAAGTTACATGTCGTCTGCTCTAACAACTGAAGGTGGTGAAGAAGAGAACTACAATAATAATAATGAGAAATATGATGGGAAAAATAGTATCTCTTTATCATCTCTCTAG 1494 0.4772 MLANNSLSSAPISETFPCGDNNGGITTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPAARKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRSSETQALQRQTQTACLSRTASSPSPSSETNFNIGPNWNNNGLVVLPKPASEPLLLKPTIAAAATPTTVAHHLHYETSSNNKNKYKLCPNLDLRLSTSSSIIPIDTSTTTPKRDETRSSNHFRISICDKNIESNTCFNINHNRRNSPKESCNSSDKPQGSNEAGMMRLVHHEEEAREQLRLAMAEKAYAEEARKQAKRQIEVAEKEFANAKRIRQEAQAELDKAYAVKEHAIKQINSLMLQITCHACKRQFGAQTMPIMSTVPPPAADENSLVVSYMSSALTTEGGEEENYNNNNEKYDGKNSISLSSL 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1017 497 MobiDBLite consensus disorder prediction 327 349 - -
Lele47g1017 497 MobiDBLite consensus disorder prediction 1 45 - -
Lele47g1017 497 Coils Coil 360 422 - -
Lele47g1017 497 MobiDBLite consensus disorder prediction 472 497 - -
Lele47g1017 497 MobiDBLite consensus disorder prediction 1 25 - -
Lele47g1017 497 FunFam protein indeterminate-domain 12-like 37 105 - -
Lele47g1017 497 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Lele47g1017 497 MobiDBLite consensus disorder prediction 327 348 - -
Lele47g1017 497 Gene3D Classic Zinc Finger 36 100 - -
Lele47g1017 497 SUPERFAMILY beta-beta-alpha zinc fingers 55 81 IPR036236 -
Lele47g1017 497 SMART c2h2final6 135 162 IPR013087 -
Lele47g1017 497 SMART c2h2final6 58 80 IPR013087 -
Lele47g1017 497 SMART c2h2final6 99 129 IPR013087 -
Lele47g1017 497 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Lele47g1017 497 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Lele47g1017 497 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 438 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1017 Lele-ChrLele47 16081861 16084476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g1017 370 473 C2H2 Transcription Factor Family AT1G25250 54.717 1.21e-23 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele47g1017 zf-C2H2 0.0048 CL0361