Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1010 ATGATTTCTTCTCTTTTAATCTTCACAAATGGTGCTGAGATGAAATCCAAGAAAGAACAAAAGAACAGAAAGCTCAATCTGGAGCTTGTTATTCCAAACCATTTCATTTGTCCTGTTTCTCTTGATTTGATGAAAGATCCCATCACGTTATCATCTGGAATCACCTACGATCGTGCGAGCATCGAAAGGTGGTTCGAAGATAGGAATTTCACGTGCCCTGTAACGAATCAGATTCTCTCGAGCTTCGATCTCGTTCCTAATCACTCGCTTAGGGTTATGATTCAGGATTGGTGCGTTGAGAATCGAGGATTTGGGATAGAGAGAATTCCGACTCCCAGAGTGCCTATAATCAAGGAATGGAGTTCTGAGAGCGAGAGAAACAGAAGGTGTATTGTGGACAATGGTACTCCTAGTTTATTAGCCTCTGCATTTCGTGAATTCGCGAATGATTCCGTTGAGGAAAATGTGAGTTTGCTGGAGGATATTCTGAATGCCCTAAATTTGATGCTTCCGCTCCAATTCGAATCCCAGAAAATTTTGCAATCTTCAGATGCCTTGCTTTGCTTGGTTTGGTTCTTGAAGAATCAAGATCTTTCCAGAAAACAAAATGCCATTGTTGCTTTGAGAGAGATCCTTTCTTCTCGTGATGAAGAGACTTTTGAGACCGTGGCAGAAATCGAAGGGACCATTGAGCTATTAGCGGAGTTCATCAACAAGAGAATTAACCCAACAATCACGAAAGCTTCAATGGGGATTGTTTATTACTTGGTTTCATCTTCTTATCCATCAATTGAGAAGGTGAAGCTGGAATTTGTTGGCCTTGGAAGAGAAAAGGCTTTCAGTAATGCTCTAACAGTTCCTGTGTTGGTGAAGAAGATTTTGAGGGTTTCGGCTTTGGCAACAGATCACTGTGTCTCTGCTATTTGGAAGTTAAGCAGATATGGATCTAAAGATGATGATGATGAAGAAGATGAAGCAGAAGAACCTCTGATTGAAGCACTTCAAGTTGGTGCGATTCAGAAGCTGTTGGTGGTGTTGCAGGTTGGTTGTGGTGATGAGACGAAGGAGAAAACAACAAAGCTTCTGAAACTGTTGAATCCTTATAGGGCCGGCTTGGAATGCATAGACTCAGATTTCAAGAATATCAAGGGGTCATTTTGA 1161 0.4143 MISSLLIFTNGAEMKSKKEQKNRKLNLELVIPNHFICPVSLDLMKDPITLSSGITYDRASIERWFEDRNFTCPVTNQILSSFDLVPNHSLRVMIQDWCVENRGFGIERIPTPRVPIIKEWSSESERNRRCIVDNGTPSLLASAFREFANDSVEENVSLLEDILNALNLMLPLQFESQKILQSSDALLCLVWFLKNQDLSRKQNAIVALREILSSRDEETFETVAEIEGTIELLAEFINKRINPTITKASMGIVYYLVSSSYPSIEKVKLEFVGLGREKAFSNALTVPVLVKKILRVSALATDHCVSAIWKLSRYGSKDDDDEEDEAEEPLIEALQVGAIQKLLVVLQVGCGDETKEKTTKLLKLLNPYRAGLECIDSDFKNIKGSF 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1010 386 CDD RING-Ubox_PUB 35 77 IPR045210 -
Lele47g1010 386 SUPERFAMILY ARM repeat 117 365 IPR016024 -
Lele47g1010 386 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
Lele47g1010 386 PANTHER WDSAM1 PROTEIN 275 366 IPR045185 GO:0061630
Lele47g1010 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 104 IPR013083 -
Lele47g1010 386 Gene3D - 116 368 IPR011989 -
Lele47g1010 386 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Lele47g1010 386 FunFam RING-type E3 ubiquitin transferase 31 102 - -
Lele47g1010 386 SUPERFAMILY RING/U-box 30 105 - -
Lele47g1010 386 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1010 Lele-ChrLele47 16020162 16021870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g1010 28 386 U-box Gene Family AT5G37490 37.589 4.99e-75 238