Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1006 ATGAGTGGTGAGAAAAGAGAAGAATATCCGGCATTTGATGAGAAAGAGGAAGAAGAAGAAGGAGAAGAGAAAGATCATGAGATCCTCAAGAGCAGAATCTCTAACCATCCACTCTATGACCTTCTCGTTCAACAACACCTCAATTGTTTGAAGGTGGGTGAGATTTGCAACTTGGAGAAAGTGAAGAAGAAGGAAGATAGAGAGAAGAAAGCAATGAAGAAGCAAAACCTGGGCATGCTTAGTCATTCAGAGCTCGATCACTTCATGGAAGCATATTGTATGGCACTAGGGACGCTGAAAGAAGCAATGGAGGAGCCTCAAACAGAATCACTGGCTTTCATCAAGAACATGCATTCTCAGCTCAGAGACCTCACTGATGGATTAACCCTCTCTTCTTCTTCTTCTTCATCGTCTTCGTCTCACTCCAACTTCCAAACACGTCCTTGA 447 0.4318 MSGEKREEYPAFDEKEEEEEGEEKDHEILKSRISNHPLYDLLVQQHLNCLKVGEICNLEKVKKKEDREKKAMKKQNLGMLSHSELDHFMEAYCMALGTLKEAMEEPQTESLAFIKNMHSQLRDLTDGLTLSSSSSSSSSSHSNFQTRP 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1006 148 Coils Coil 12 32 - -
Lele47g1006 148 MobiDBLite consensus disorder prediction 1 29 - -
Lele47g1006 148 Pfam KNOX2 domain 83 125 IPR005541 GO:0003677|GO:0005634
Lele47g1006 148 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 ISOFORM X1 13 126 - -
Lele47g1006 148 Pfam KNOX1 domain 29 53 IPR005540 GO:0003677|GO:0005634
Lele47g1006 148 MobiDBLite consensus disorder prediction 125 148 - -
Lele47g1006 148 SMART KNOX2_2 75 126 IPR005541 GO:0003677|GO:0005634
Lele47g1006 148 SMART KNOX1_2 27 67 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1006 Lele-ChrLele47 15998390 15999686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g1006 25 121 Homeobox Transcription Factor Family AT4G08150 33.663 5.59e-12 60.5