Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0979 ATGAATCTGAGCAACGGCAAGGGATCTATGTCAACGGTTAGCTCTAGTGCGGTTTCCAAGTCCGGTGACATCGTCTCCGACCAGTTTCCGGTGGGTCTCCGGGTACTGGTGGTGGATGATGATCCCACGTGCCTCATGATACTTGAAAAGATGCTTCGCACTTGCCTCTACGAAGTTACGAAATGCAATCGAGCGGAGATTGCGCTGTCACTTCTGAGAGAGAACAAAAATGGGTTCGACATTGTTATAAGCGATGTACATATGCCAGACATGGATGGATTCAAACTCTTGGAGCACATTGGATTAGAGATGGACCTTCCCGTTATCATGATGTCTGCAGATGATGGAAAGAATGTTGTTATGAAGGGTGTGACTCACGGTGCCTGTGATTACCTTATAAAACCTGTGCGCATCGAGGCTCTAAAGAATATATGGCAACACGTGATTCGTAAGAGAAAGAATGAATGGAAGGATTTGGAGCAGTCAGGTAGTGCAGAAGAAGGAGACCAGAAACAAAAGCCAACTGATGAGTCGGAGTACTCATCCTCTGCAAACGAAGGCAATTGGAGAAACGCAAAGAAGAGGAGGGACGAGGATGAAGAAGCAGAGGAGAGGGATGACTCATCCACGTTAAAGAAGCCAAGAGTCGTTTGGTCAGTTGAGCTCCATCAACAGTTTGTCGCTGCTGTGAATCAGCTAGGAATTGATAAGGCAGTTCCTAAAAAAATTCTGGAATTGATGAATGTCCCTGGGCTCACTAGAGAAAATGTTGCTAGCCACCTCCAGAAATATCGCTTGTATCTTCGAAGGCTGAGTGGTGTTTCTCAACATCAGGGTAACCTGAATAGCTCTTTCATCAGCTCACAAGAGGCGACTTTTGGGGCAATTTCTTCTCTCAATGGAACGGATCTTCAAACTCTTGCTGCTGCAGGTCAGCTTCCACCACAAAGTCTAGCAACACTTCAAGTAGCAGGACTAGGGAGATCAACTGCAAAAACTGGTATGCCCATGCCCCTTGTTGATCAAAGGAACCTTTTCAGTTTTGAAAACCCAAGATTAAGATTCGGAGAAGGACAACAGCAATATGGGAGCAGTGGCAAACCAATGAACTTACTTCACGGTATCCCTACCAACATGGAGCCAAAGCAGCTTGCTTCTTTGCACCAATCTACTCAATCCTTAGGTGGCTTGAATATGCGAGTCAATGCTTCTCCTTCCCAGAGCAACCCCCTATTAATGCAGATTTCTCAATCTCAACCAAGAGGTCATATGCTTAGTGAACATAATGTCTCTCATGTTCCCAGGCTTCCAACATCTATGGGGCAGTCTTCAGTATCAAATGGGTCTCCCAGTAGTGTTCTGGGAAGACATGGTATTCCTGATAATGGCAGAGGAGTTTCATATAATCAAGTTCCACAAACCTCTTCAATGTTGAACTTTCCCATGAACCAAACCACAGAAATGCCTGCGAGTAGCTTTCCTCTCGGAAGTACTCCAGATATGTCAAATATTGCATCAAAAGGAGTTTACCAAGATGGGGTTGGTTCAGGAATGAAAGGATCTTCTGGGTTTGCTCCAAGTTATGATATCTTTAATGAACTGCATCAGCATAAGTCCCATGAATGGGGGTTGGAGAACATGGGCCAGAGCCAGACATATGACGCCCCTCAGCATGCAAATCCCTTACAAGGCAACATTGATGTCCCATCATCAGTTCTAGTCCATCAAGGTTTCTCTTCCAACCAACAGATTGGACAGAATAGAGATGCAACTTCGGTTGGAAAAGCCATGTTCTCCCTAGGGGAAGGCATGGTATCAGGTAATTTCCAGAATACTGGTCAACATCTGGGTTTCCAAAATACGCTTCCTACTGACAATTCAGTAAGGGTTAAGGCTGAAAGAATTCCTGATGCTAACTCTCAGACTAACCTCTTCCCTGAGCACTATGGGCAAGAGGATCTCATGAGTGCACTACTTCTGAAACAGAAGGCATTGGACCAGCCGAGAATGAGTTTGACTATGATGGATATTCCTTGGACAACATCCCTGTCTAGAGCAGATGCTGCCAGTTCTCTTTCAGATTGCAGTTGCCAATCTGTTATTCTGTGTTCTGTGGTTTCATGGAGTGCATTAGAGGGATGTTTGAGGTTGAGGAATATATTCGTTGTCTCTTTGTGGTCGGAATATTCTTGTGGTTACCTTCAACGTAAGAATATAGATAATGGGACTGATAACTTTGTCAAAGCATTTACACTTTAG 2259 0.4467 MNLSNGKGSMSTVSSSAVSKSGDIVSDQFPVGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAEIALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVIRKRKNEWKDLEQSGSAEEGDQKQKPTDESEYSSSANEGNWRNAKKRRDEDEEAEERDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQGNLNSSFISSQEATFGAISSLNGTDLQTLAAAGQLPPQSLATLQVAGLGRSTAKTGMPMPLVDQRNLFSFENPRLRFGEGQQQYGSSGKPMNLLHGIPTNMEPKQLASLHQSTQSLGGLNMRVNASPSQSNPLLMQISQSQPRGHMLSEHNVSHVPRLPTSMGQSSVSNGSPSSVLGRHGIPDNGRGVSYNQVPQTSSMLNFPMNQTTEMPASSFPLGSTPDMSNIASKGVYQDGVGSGMKGSSGFAPSYDIFNELHQHKSHEWGLENMGQSQTYDAPQHANPLQGNIDVPSSVLVHQGFSSNQQIGQNRDATSVGKAMFSLGEGMVSGNFQNTGQHLGFQNTLPTDNSVRVKAERIPDANSQTNLFPEHYGQEDLMSALLLKQKALDQPRMSLTMMDIPWTTSLSRADAASSLSDCSCQSVILCSVVSWSALEGCLRLRNIFVVSLWSEYSCGYLQRKNIDNGTDNFVKAFTL 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0979 752 Gene3D - 210 272 - -
Lele47g0979 752 MobiDBLite consensus disorder prediction 157 176 - -
Lele47g0979 752 MobiDBLite consensus disorder prediction 189 210 - -
Lele47g0979 752 MobiDBLite consensus disorder prediction 157 210 - -
Lele47g0979 752 SMART REC_2 33 145 IPR001789 GO:0000160
Lele47g0979 752 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 389 IPR045279 GO:0009736
Lele47g0979 752 Gene3D - 33 171 - -
Lele47g0979 752 MobiDBLite consensus disorder prediction 439 453 - -
Lele47g0979 752 PIRSF RR_ARR_type-B 10 673 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lele47g0979 752 CDD REC_typeB_ARR-like 35 149 - -
Lele47g0979 752 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Lele47g0979 752 SUPERFAMILY CheY-like 32 156 IPR011006 -
Lele47g0979 752 MobiDBLite consensus disorder prediction 439 462 - -
Lele47g0979 752 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Lele47g0979 752 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Lele47g0979 752 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Lele47g0979 752 FunFam Two-component response regulator 33 170 - -
Lele47g0979 752 FunFam Two-component response regulator 209 272 - -
Lele47g0979 752 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Lele47g0979 752 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0979 Lele-ChrLele47 15799321 15803880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0979 67 665 Response Regulator Gene Family AT3G16857 48.442 5.31e-163 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lele47g0979 Response_reg 1.2e-22 CL0304