Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0976 ATGGTCTTAAGGCCTGGCAGTACACTACTCATTGGTGCCAAATTACAGATCTTCGAAATAATGGTAGATCTGAGTGGGAAGGGATCGGAGGCAGAGGACACCAATAACAGAAACCCTAACGGGGGTTCGTCGGACGAAAGCCCACTGAGCAACGAGCAGAAGAAAACCTGTGCCGACTGTGGCACATCAAAAACTCCTCTCTGGAGAGGCGGCCCGGCCGGGCCCAAGTCTCTGTGCAACGCATGTGGGATCAGAAGCAGGAAGAAGAAGAGAGCTATTCTGGGCATGAACAAGGGAAGTAATGGAGAGAAAAAGGGCAAAAGAAGCAACAACAATGCTAAGATTGGGGAAAGTTTGAAGCAGAGATTAATGGCTCTGGGAAGGGAGGTTTTGATGCAGAGGTCGACGGTGGAGAGGCAGAGGAAGAATCTGGGAGAGGAAGAACAAGCCGCTGTGTTGTTGATGGCTCTCTCCTATGGCTCTGTTTATGCTTATTGTAAGAAAATGATTGAATCCCAATTTTGGCAATATAATCCCTTATTTGTTCTCAATTCCAAAGATGAAGCAGAGACCAGGCTTCTTGTTGGTTTTATCGCTTTCTTCTTCTCCTTCAGCTTCATTCTGCGTGAGCGTGTTGGATCATCAAGGGCCTTATTCGATAGGAAATTCCCATTTCCCCTTGCACATTTCCTTTATCTGGGTTCTGTTCAGATCTTCGAAATAATGGTGGATCTGAGCGGAAAGGGATCGGAGGCAGAGGACACCAATAACAGAAACCCTAACGGGGATTCATCGGACGAAAGCCCAATGAGCAACGAGCAGAAGAAAACCTGCGCCACCTGTGGCACATCAAAAACCCCTCTCTGGAGAGGCGGTCCTGCCGGGCCCAAGTCTCTGTGCAACGCATGTGGGATCAGAAGCAGCAAGAAGAAGAGAGCGATTGTGGGCATAAACAAGGGAAGTACGGAAGAGAAAAAGGGCAAAAGAAGCAGCAACAATGCTAAGATTGGGGAAAGCTTGAAGCAGAGATTAATGGCTCTGGGAAGTGAGGTTTTGATGCAGAGATCAACGGTGGAAAGGCAAAGGAAGAAGCTGGGAGAAGAAGAACAAGCGGCAGTGTTGTTGATGGCTCTCTCCTATGGCTCTGTTTATGCTTAA 1158 0.481 MVLRPGSTLLIGAKLQIFEIMVDLSGKGSEAEDTNNRNPNGGSSDESPLSNEQKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGMNKGSNGEKKGKRSNNNAKIGESLKQRLMALGREVLMQRSTVERQRKNLGEEEQAAVLLMALSYGSVYAYCKKMIESQFWQYNPLFVLNSKDEAETRLLVGFIAFFFSFSFILRERVGSSRALFDRKFPFPLAHFLYLGSVQIFEIMVDLSGKGSEAEDTNNRNPNGDSSDESPMSNEQKKTCATCGTSKTPLWRGGPAGPKSLCNACGIRSSKKKRAIVGINKGSTEEKKGKRSSNNAKIGESLKQRLMALGSEVLMQRSTVERQRKKLGEEEQAAVLLMALSYGSVYA 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0976 385 MobiDBLite consensus disorder prediction 93 114 - -
Lele47g0976 385 MobiDBLite consensus disorder prediction 29 60 - -
Lele47g0976 385 ProSiteProfiles GATA-type zinc finger domain profile. 51 87 IPR000679 GO:0006355|GO:0043565
Lele47g0976 385 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 49 91 - -
Lele47g0976 385 CDD ZnF_GATA 277 312 IPR000679 GO:0006355|GO:0043565
Lele47g0976 385 SMART GATA_3 51 101 IPR000679 GO:0006355|GO:0043565
Lele47g0976 385 SMART GATA_3 272 336 IPR000679 GO:0006355|GO:0043565
Lele47g0976 385 MobiDBLite consensus disorder prediction 250 278 - -
Lele47g0976 385 Gene3D - 272 337 IPR013088 GO:0006355|GO:0008270
Lele47g0976 385 Gene3D - 51 116 IPR013088 GO:0006355|GO:0008270
Lele47g0976 385 MobiDBLite consensus disorder prediction 28 68 - -
Lele47g0976 385 ProSitePatterns GATA-type zinc finger domain. 278 303 IPR000679 GO:0006355|GO:0043565
Lele47g0976 385 CDD ZnF_GATA 56 108 IPR000679 GO:0006355|GO:0043565
Lele47g0976 385 ProSiteProfiles GATA-type zinc finger domain profile. 272 305 IPR000679 GO:0006355|GO:0043565
Lele47g0976 385 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 270 312 - -
Lele47g0976 385 ProSitePatterns GATA-type zinc finger domain. 57 82 IPR000679 GO:0006355|GO:0043565
Lele47g0976 385 Pfam GATA zinc finger 57 90 IPR000679 GO:0006355|GO:0043565
Lele47g0976 385 Pfam GATA zinc finger 278 311 IPR000679 GO:0006355|GO:0043565
Lele47g0976 385 PANTHER OS01G0976800 PROTEIN 247 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0976 Lele-ChrLele47 15771752 15779741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0976 270 385 C2C2-Gata Transcription Factor Family AT3G06740 70.339 1.32e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele47g0976 GATA 2e-14 CL0167