Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0975 ATGAGTTCTTCTGAAAACCCTAGCTCTCGTAAGTGCGAGACAAGAAAGTCTTCATCATCTTCTTCTTCAGCTAATCTGAAGCTATTTGGGTTCCCATTAAGCGCAAGTGCTCCTAATGCCTTAATTTCCTCAAAGAATAAGAGATCATTCAAATGCCATTTCTGTCAGCGAGAATTCTCTAATTCTCAAGCTCTTGGAGGCCATCAAAATGCCCATAAAAGAGAACGTCGTGAAGCTACCTTTGCTCATTTCGAGAACCTTAGCCACCTTCATCTTCTTCCTCATCCTCATCGTCAACGCCTCCCCATCACTTCATCATCATCGTCACTTGCTTCACTTTATGCTGATGATGACAGAGAGGCACGTGATGATGCTGAAAAAGAGATCTCGAGTGAAGAATCAGTACGAAATGGCAATGATGATGATGGCGTCGATCTTAACTTGAGTTTATAG 453 0.4238 MSSSENPSSRKCETRKSSSSSSSANLKLFGFPLSASAPNALISSKNKRSFKCHFCQREFSNSQALGGHQNAHKRERREATFAHFENLSHLHLLPHPHRQRLPITSSSSSLASLYADDDREARDDAEKEISSEESVRNGNDDDGVDLNLSL 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0975 150 MobiDBLite consensus disorder prediction 115 140 - -
Lele47g0975 150 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 77 IPR013087 -
Lele47g0975 150 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
Lele47g0975 150 MobiDBLite consensus disorder prediction 1 23 - -
Lele47g0975 150 SUPERFAMILY beta-beta-alpha zinc fingers 46 77 IPR036236 -
Lele47g0975 150 Gene3D Classic Zinc Finger 37 98 - -
Lele47g0975 150 PANTHER ZINC FINGER PROTEIN 5 10 84 IPR044299 GO:0010090
Lele47g0975 150 MobiDBLite consensus disorder prediction 95 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0975 Lele-ChrLele47 15751094 15751546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0975 26 79 C2H2 Transcription Factor Family AT5G06650 48.485 2.24e-12 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele47g0975 None None None