Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0938 ATGCCGGTGAATCTCACGCCCAACGCGATCCCGGCGATTGTAGCCGGCGACGTGAACTCAAAGCCGCTCGTCCAGGTCCTCGACATCAAGTTGCTTTCTAATTCTCAGCAGGAGAGGTACCGACTTCTGCTTTCCGATTCCGCTTCCACTCAGCACGCTATGCTCGCGACTCAGCTGAACGACCGAGTTAGAACCGGACGAATCAAGAAAGGTTCCGTCGTTCAGCTGATTGAGTACATTTGCAGTCAAATTCAGAACCGCAAGATCATTGTAGTGCTCAACATGGAAACTATAATTCCAGATTGTGAGATTATCGGGCATCCAAACTCATTCGTGGAATCTGATTCGACAGCTCAGAAAGCATTGCCTAATAACAATATGCAGAACTCATCCAGGCTTAATAATCGTCTGTCTGCTCAAAATTCAAGTCATGATGAGCAGAATTTCAGGCCAACTGTTCAACCTCCATTCCGACCACCACCAGTTTACAAAGGCCATGGTGCTATAATGAAGAATGAAGCACCTCCACGGATCATTCCTATTGCTGCTTTAAATCCTTATCAAGGCCGGTGGGCCATTAAGGCAAGAGTAACTGCAAAAGGGGATCTCCGCCGCTATAATAATGCTCGAGGAGATGGAAAAGTTTTCTCTTTTGATCTCCTTGACTCTGATGGAGGTGAAGTACGAGTAACTTGCTTCAATGCTGTTGTTGACCGATTTTATGATTTAATTGAGGTTGGTAGAGTTTACTTGATATCCAAAGGTAGCTTAAAACCTGCACAAAAGAACTTCAATCATTTGAAGAATGACTGGGAAATTTTCCTGGACTCTAATTCATCTGTGGAGCTATGCCCAGATGAAGATGCTTCAATACCCAGACAGCAATTCTCCTTTAGGCCTATCAGTGACATTGAGAATGCCGAAAGTAACTGCATTCTTGATGTTATTGGGGTTGTGACATCTGTAAATCCCTCTGTTCCCATCTTGAGGAAGAATGGTATGGAAACTCAAAGGCGAATTCTGAATGTAAAGGACATGTCTGGCAGGAGTGTTGAGCTAACCCTTTGGGGTGATTTCTGCAATAGGGAAGGTCAAAAGCTTCAAGAGATGGTTGACGGTGGGTTTTTCCCAGTTCTGGCAATTAAATCTGGGAGGGTTAATGACTTTAGTGGAAAATCTATAGGAACCATTTCTTCTACCCAACTCTTCATTAACCCAGATTTTCCTGAAGCTCATAGGTTAAGAGACTGGTTTGATCAAGGGGGGAAAGATTCAGCTTCTTTGTCCATTTCCAAAGACATTGCACCTGGAGGACCTAAGAATGAGATACGTAAAACTGTGTCTCAGATCAAAGATGAAGGCCTGGGGCGATCAGATAAGCCAGATTGGATAACGGTGAGGGCAACGATATATTCCATCAAGACGGATACATTTTGTTACACAGCTTGCCCACTGATGATCGGAGACCGACAGTGCAGTAAAAAAGTGACTAGGTCAGGAAGCACTAAGTGGCAATGCGATAGATGCAATCAAGAGTTTGAGGAGTGTGATTACCGTTACCTTCTCCAAGCCCAAATTCTGGATCATACGGGAATAACTTGGGTCACAGCATTCCAAGAATCAGGAGAGGAAATCTTGGGTTGCTCAGCAAAGGAGCTGTACTTATTGAAGTATGAAGAACAGGATGATGATAAGTTTGGGAACATGATCCGTAGTAAACTCTTCAACCAGTTTGTGTTTCGGCTCAAAGTTAAGGAAGAATTGTATGGTGATGAACAGAGAGTGAAGATTACAGTGGTTAAGGCAGATAAAGTGGATTACTCTTCAGAGAGTAGATACATGCTAGATTTGATTTCAAAATTTTGTAAACAGTAA 1875 0.4336 MPVNLTPNAIPAIVAGDVNSKPLVQVLDIKLLSNSQQERYRLLLSDSASTQHAMLATQLNDRVRTGRIKKGSVVQLIEYICSQIQNRKIIVVLNMETIIPDCEIIGHPNSFVESDSTAQKALPNNNMQNSSRLNNRLSAQNSSHDEQNFRPTVQPPFRPPPVYKGHGAIMKNEAPPRIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEVRVTCFNAVVDRFYDLIEVGRVYLISKGSLKPAQKNFNHLKNDWEIFLDSNSSVELCPDEDASIPRQQFSFRPISDIENAESNCILDVIGVVTSVNPSVPILRKNGMETQRRILNVKDMSGRSVELTLWGDFCNREGQKLQEMVDGGFFPVLAIKSGRVNDFSGKSIGTISSTQLFINPDFPEAHRLRDWFDQGGKDSASLSISKDIAPGGPKNEIRKTVSQIKDEGLGRSDKPDWITVRATIYSIKTDTFCYTACPLMIGDRQCSKKVTRSGSTKWQCDRCNQEFEECDYRYLLQAQILDHTGITWVTAFQESGEEILGCSAKELYLLKYEEQDDDKFGNMIRSKLFNQFVFRLKVKEELYGDEQRVKITVVKADKVDYSSESRYMLDLISKFCKQ 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0938 624 FunFam Replication protein A subunit 290 428 - -
Lele47g0938 624 Pfam Replication protein A OB domain 301 405 IPR031657 -
Lele47g0938 624 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 5 620 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lele47g0938 624 CDD RPA1_DBD_A 180 283 - -
Lele47g0938 624 Pfam Replication factor-A C terminal domain 463 613 IPR013955 -
Lele47g0938 624 FunFam Replication protein A subunit 4 112 - -
Lele47g0938 624 SUPERFAMILY Nucleic acid-binding proteins 295 423 IPR012340 -
Lele47g0938 624 Pfam OB-fold nucleic acid binding domain 192 264 IPR004365 GO:0003676
Lele47g0938 624 Gene3D - 289 429 IPR012340 -
Lele47g0938 624 Gene3D - 177 287 IPR012340 -
Lele47g0938 624 FunFam Replication protein A subunit 429 621 - -
Lele47g0938 624 FunFam Replication protein A subunit 177 286 - -
Lele47g0938 624 CDD RPA1_DBD_C 447 620 IPR013955 -
Lele47g0938 624 PANTHER REPLICATION FACTOR A 1, RFA1 191 597 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lele47g0938 624 Gene3D - 3 112 IPR012340 -
Lele47g0938 624 MobiDBLite consensus disorder prediction 137 157 - -
Lele47g0938 624 Gene3D - 431 622 IPR012340 -
Lele47g0938 624 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
Lele47g0938 624 SUPERFAMILY Nucleic acid-binding proteins 177 291 IPR012340 -
Lele47g0938 624 Pfam Replication factor-A protein 1, N-terminal domain 5 98 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lele47g0938 624 CDD RPA1_DBD_B 312 419 - -
Lele47g0938 624 CDD RPA1N 9 99 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lele47g0938 624 SUPERFAMILY Nucleic acid-binding proteins 444 621 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0938 Lele-ChrLele47 15485965 15488724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0938 26 620 Core DNA Replication Machinery Family AT2G06510 70.244 0.0 914