Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0937 ATGAGCAAGAAGAGAAAGTTCGTTGCCGATGGCGTTTTCTTCGCCGAGTTGAACGAGGTTTTGACCCGAGAGCTTGCCGAGGATGGATACTCTGGTGTTGAAGTTCGAGTTACTCCGATGCGCACTGAGATCATTATCAGAGCCACGCGAACCCAGAATGTGCTTGGTGAGAAGGGTAGGAGAATCAGGGAACTGACCTCGGTTGTACAGAAGAGATTTAAGTTCCCGGAGAACAGCGTCGAGCTATATGTTGAGAAGGTGAACAACAGAGGTCTTTGTGCTATTGCTCAGGCCGAGTCTCTTCGCTATAAGCTTCTTGGTGGACTCGCTGTGCGGAGGGCATGCTATGGTGTTTTAAGATTTGTTATGGAAAGTGGAGCAAAGGGATGTGAGGTCATTGTAAGTGGAAAACTGAGGGCTCAGCGTGCCAAATCCATGAAGTTCAAGGATGGATATATGATTTCATCTGGTCAGCCAGTTAAGGACTATATTGATTCTGCAGTAAGACACGTACTACTCAGACAGGGGGTTCTTGGCATCAAGGTCAGGATCATGCTTGATTGGGACCCTAAGGGAAAGCAGGGTCCTAAAACCCCTCTTCCTGATATTGTCACAATCCATCCCCCAAAGGAGGAAGAAGAATACAACCGGCCTGCTGCTGTTGTGGCAGCTGATATTGATGTCCCCGTCGTGCCCGTGGCTTGA 705 0.4879 MSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVRIMLDWDPKGKQGPKTPLPDIVTIHPPKEEEEYNRPAAVVAADIDVPVVPVA 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0937 234 FunFam 40S ribosomal protein S3 89 224 - -
Lele47g0937 234 CDD 40S_S3_KH 11 91 - -
Lele47g0937 234 Gene3D - 1 87 IPR015946 -
Lele47g0937 234 Pfam KH domain 16 89 IPR004044 GO:0003723
Lele47g0937 234 ProSitePatterns Ribosomal protein S3 signature. 143 179 IPR018280 -
Lele47g0937 234 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 6 95 IPR009019 GO:0003723
Lele47g0937 234 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 3 198 - -
Lele47g0937 234 Gene3D - 89 226 IPR036419 -
Lele47g0937 234 ProSiteProfiles Type-2 KH domain profile. 17 88 IPR004044 GO:0003723
Lele47g0937 234 Pfam Ribosomal protein S3, C-terminal domain 102 184 IPR001351 GO:0003735|GO:0006412
Lele47g0937 234 SUPERFAMILY Ribosomal protein S3 C-terminal domain 89 187 IPR036419 -
Lele47g0937 234 FunFam 40S ribosomal protein S3 1 88 - -
Lele47g0937 234 TIGRFAM uS3_euk_arch: ribosomal protein uS3 4 206 IPR005703 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0937 Lele-ChrLele47 15481886 15484311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0937 1 233 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 86.266 1.60e-149 414