Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0921 ATGGCTTTCGGGTTGGACTCCCACGATGTCTCCGCTTTCAAATTCTTGTCGTTCATGGCGGTCTTGTACGGTCTCTTGTCGATGCTGGCTCATTCTGTCACTCATATGAAGTTTATTAAGCCACTCGAATTGGATGCCCCTGTCGATCGCTTTTCGGAAGGCAGAGCCATCGAACATGTACGAGTCTTGTCGAAAGAGATCGATGGTCGTCAAGAAGGACGTCCTGGATTGAGAAAAGCTGCTGAATATATCAAGGGTCAGTTAGAAGTAATAAAGGAGCGAGCTAGGTCCAGTGTCAGAATTGAGATTGAGGAAACCACTGTAAATGGCTCCTTTACCATGATCTTTTTGCAGCATGGCATAGCTCTGGGATACAGGAACCATACAAACATTATTATGAGGATATCATCTAAAGATTCGAAAGATACCGATCCATCAGTTTTAGTGAATGGGCATTTTGATAGTCCACTTGGTTCCCCAGGCGCTGGAGATTGTGGTTCATGTGTTGCATCAATGCTGGAATTGGCAAGACTAATTGTGGACTCTGGCTGGGCTCCAACCCGCCCTGTTATATTCCTCTTTAATGGTGCTGAGGAACTCTTCATGTTGGGTGCACATGGGTTCATGAAGGCACATAAGTGGCATGATACAATTGGAGCTGCTATAAATGTGGAGGCATCTGGGACTGGAGGACCTGATTTAGTTTGTCAATCTGGACCTGGTTCTTGGCCTTCTAATGTCTATGCTGAAGCAGCAATATACCCTATGGCTAATAGTGCAGCACAGGATGTTTTTCCTGTTATTCCTGGAGATACAGATTACCGGATATTTTCCCAAGACTATGGGAATATTCCTGGGCTTGACATCATCTTTCTTCTTGGTGGTTATTTTTACCATACCTCCTATGATACAATAGAGAGATTGCTACCTGGAAGCATCCAAGCACGTGGTGACAATTTGTTCAGCATAATCAAAGCTTTCGTTAATTCCTCTAAGCTAAGCAATATATATCAAGCAAATTCTAGTGAAGTTACGGCAAGTACATATGAAGATGAGCGGGCAGTTTTCTTTGACTATCTCTCATTGTTTATGATATCCTATTCCAGAAAAGTAGCTTGGATTCTTCATAGCGTTCCTATCTTCATCTTCTTTATCATGCCTTCCTTCTTGACACATAGTCAATCACGCTCATGGTCAGCAACTTCTTGTGATTTTATGAAAGGCTTTCTAATTCATACTGTGGGGATTATATTGGGGATTGTTGTTCCGATCATATTTTCTTTAATTAAAATTCAGTTCTCTTCTCAGACCATGAATTGGTTTGGACGTCCGTACCTGGCTTTCATGATGTATATACCCGGCTCACTTATTGGTCTTTTAATTCCCAGAATTGTTTGGAGACACTTTCCTCTGACTCAAGATATTTTAGTTGCCAAGACTTCAAAAGAGGCACTATCTGATGAAGGAAGGTTCTGGGGAGCATTTGGATTTTATGCTGTATTTACTGTGGCTTACCTTGGCGCTGGGTTGAATGGAGGTTTCTTAACTTTTGTGATGTCTACTTTCATGCTTCCTGCATGGATATCGTTCTGCTTATCAGTGAAATCCTATGGACGCCAATCTCTCAGGTCAACGATGTTTTACATGATACCTCTGGTTCCATGCCTTGCATACACCGTTCATTTTGGTGGCTTTTTATCTGAGTTTGTAATTGAAAAGATGGGAATGATGGGTGCTCTTCCTCCGCCCTGGGGGGAATACGTGCCTGACTTTGTTGTAGCTGCACTAGTTGGAATCGTAACTGGTTGGTGCTTGGGCCCTCTATTACCTATTTGTGGCCATTGGTTAGCCAGAAAATCAATCTTGCAATTTCTGCTGCATCTTAGTGTGCTTGCTTTGGCATTGTCATCTCAGTTTTTTCCTTACAGCATTTCTGCACCTAAGAGGGTTGTTTTCCAACATACTTTTCATACTGCAGGCTCAAGTGAGATTGTGGAAGCCACTTATGATTTTTCTGTGGTGGATTCCAATTCTTTACTTTTCCTTTTTAGACATGCACCTGAAGTAGCAAGGGAGTTGGAAGTTCATTCTGAGTTTTCATTTCAATCTGGAATGATGTCTAAACGCCAAAATTGGATGGCAATTTTTCCTGTTTCTTTTCTCTTTTCAAATAGCCTGAAGTTCCCTGCTAAAGGGGATGATATATTGGAGAAGTACGAATCTTTTCCCAAGTTGTCTGTTGAGAAGTCTTATTCTAACTCTACAAAGGGACTGAAGAGAGTTTACTTGGAGCTTTCTTTAGGTTCCTTAGAAGAGGTCTGGGTTGCTGTTCTCAACATAACTGGTCCTTTATCCAGTTGGTCATTTGCTGATAATGTTCTTCCAGCAACTGAAACAGCAGATGGCGGTCCACCTTCATATATATTGCGACTTAGCGGCGCCAGTGACGAGAATTGGAACTTCTGGTTAGAGGCTAACGGCTCTCAAGCATTAAGAGTGGATCTTGCTGTATTAGACCAAAAATTGGTTGAACCAGCAAAGAAATTGAAGGGTCTTTTCCCAGAGTGGGTTGATGTCGTTGCCTATTCTAGTTTTTTGTCAATCGTATCATATAAGAAGAACAAATCACGAGGCAACTTTCTTCTATGCACCGAAGGCCATCGGCGAGGCGAGAGAGAAGCTCCCATAGTAGACGCCATGGTGAAGTACTCCAGGGAGCCTGGCAATCCTACTAAGTCCTGCAAGGCTAGAGGCTCCGACCTCAGAGTTCATTTCAAGAATACTCGTGAGACTGCCTTCGCCATCAGGAAGTTACCCTTGGCAAAGGCTAAGAGGTACTTGGAGGATGTCCTAGCACACAAACAAGCCATTCCATTCCGAAGGTTTTGTGGTGGAGTTGGTAGGACAGCCCAAGCTAAGAATAGACATTCTAATGGGCAAGGGCGCTGGCCTGTTAAATCGGCTAAATTCATTCTAGACTTGCTTAAGAATGCTGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTCGATGCCCTCTACATTTCTCATATCCAGGTTAATCAAGCACAGAAGCAAAGACGCCGCACGTACCGAGCTCATGGAAGGATCAACCCTTATATGTCATCTCCCTGCCATATTGAGCTTATATTATCTGAGAAGGAAGAACCTGTGAGGAAGGAGCCGGAGACCCAGTTGGCCACAAGCAAGAAAGCCTAA 3216 0.4316 MAFGLDSHDVSAFKFLSFMAVLYGLLSMLAHSVTHMKFIKPLELDAPVDRFSEGRAIEHVRVLSKEIDGRQEGRPGLRKAAEYIKGQLEVIKERARSSVRIEIEETTVNGSFTMIFLQHGIALGYRNHTNIIMRISSKDSKDTDPSVLVNGHFDSPLGSPGAGDCGSCVASMLELARLIVDSGWAPTRPVIFLFNGAEELFMLGAHGFMKAHKWHDTIGAAINVEASGTGGPDLVCQSGPGSWPSNVYAEAAIYPMANSAAQDVFPVIPGDTDYRIFSQDYGNIPGLDIIFLLGGYFYHTSYDTIERLLPGSIQARGDNLFSIIKAFVNSSKLSNIYQANSSEVTASTYEDERAVFFDYLSLFMISYSRKVAWILHSVPIFIFFIMPSFLTHSQSRSWSATSCDFMKGFLIHTVGIILGIVVPIIFSLIKIQFSSQTMNWFGRPYLAFMMYIPGSLIGLLIPRIVWRHFPLTQDILVAKTSKEALSDEGRFWGAFGFYAVFTVAYLGAGLNGGFLTFVMSTFMLPAWISFCLSVKSYGRQSLRSTMFYMIPLVPCLAYTVHFGGFLSEFVIEKMGMMGALPPPWGEYVPDFVVAALVGIVTGWCLGPLLPICGHWLARKSILQFLLHLSVLALALSSQFFPYSISAPKRVVFQHTFHTAGSSEIVEATYDFSVVDSNSLLFLFRHAPEVARELEVHSEFSFQSGMMSKRQNWMAIFPVSFLFSNSLKFPAKGDDILEKYESFPKLSVEKSYSNSTKGLKRVYLELSLGSLEEVWVAVLNITGPLSSWSFADNVLPATETADGGPPSYILRLSGASDENWNFWLEANGSQALRVDLAVLDQKLVEPAKKLKGLFPEWVDVVAYSSFLSIVSYKKNKSRGNFLLCTEGHRRGEREAPIVDAMVKYSREPGNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVRKEPETQLATSKKA 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0921 1071 FunFam 60S ribosomal protein L17 900 1071 - -
Lele47g0921 1071 ProSitePatterns Ribosomal protein L22 signature. 1026 1050 IPR018260 GO:0003735|GO:0005840|GO:0006412
Lele47g0921 1071 SUPERFAMILY Ribosomal protein L22 900 1053 IPR036394 GO:0003735|GO:0005840|GO:0006412
Lele47g0921 1071 TIGRFAM uL22_arch_euk: ribosomal protein uL22 903 1053 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lele47g0921 1071 CDD M28_Fxna_like 49 367 - -
Lele47g0921 1071 Pfam Ribosomal protein L22p/L17e 916 1051 IPR001063 GO:0003735|GO:0005840|GO:0006412
Lele47g0921 1071 Pfam Peptidase family M28 130 320 IPR007484 -
Lele47g0921 1071 PANTHER METALLOPEPTIDASE M28 FAMILY MEMBER 40 733 IPR045175 GO:0006508|GO:0008235
Lele47g0921 1071 SUPERFAMILY Zn-dependent exopeptidases 40 330 - -
Lele47g0921 1071 FunFam Endoplasmic reticulum metallopeptidase 1 45 343 - -
Lele47g0921 1071 Gene3D Ribosomal protein L22/L17 900 1071 IPR036394 GO:0003735|GO:0005840|GO:0006412
Lele47g0921 1071 Hamap 50S ribosomal protein L22 [rplV]. 899 1053 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lele47g0921 1071 Gene3D Zn peptidases 45 345 - -
Lele47g0921 1071 CDD Ribosomal_L22 914 1050 IPR001063 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0921 Lele-ChrLele47 15358277 15371474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0921 900 1070 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 88.889 1.54e-107 331