Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0919 ATGGATATTGCGGAGGTTGAAGAGAATATGTTCGCAGCAAGTGATGCAAAGTTACATGGAGAATTGTGTAAGGCTCTCTCAGCATCATATTTCAAAGTATTGTCAATATTTCCATCTTTGGAAGCAGCTAGGCCCAGGAGCAAATCTGGGATCCAGGCACTATGTTCATTGCATGTGGCATTAGAGAAGGCCAAGAATGTTCTTCAGCATTGTTCGGAGTGTAGTAAGCTTTATTTGGCTATAACTGGGGATTCCGTTCTTCTAAAATTTGAGAAAGCTAAATGTGCTCTTGAGAATAGTCTTAAAAGGGTGGAAGACATTGTTCCACAATCTATTGGATGTCAGATTGAAGAGATTTTGAGTGAACTTGAAAGTATGGAATTGGCACTTGACCCAATGGAGAAGCAAATTGGCGATAATTTAATCACTTTGCTCCAGCAGGGGAGAAAGTTTAGCGACTCTACTGATAGTAGTGAGCTGGAATGTTTTCACCGGGCTGCTACTAGACTAGGAATCACTTCTTCTAGAGCAGCTCTTACTGAAAGAAGAGCTATCAAGAAACATATTGAAAGAGCTCGGGCTGAGGATGACAAGCGGAAGGAATCAATTGTTGCATATCTTTTACACCTTATGAGGAAATACTCTAAGTTATTTAGAAGTGAGTTTTCAGACGATAATGATTCTCAGGCTTCTACTCCTTGTTCTCCCACTGTTATGGGCTCTATAGAAGATGGTGTTTCTTGTGGTCATTACCAGGCCTTTGACCAACAGCTATCAAAACTTAGTTCTTTTAATTTTAAGCCAAATAATAGAAAATCAGGGCAAATGCCCCTTCCACCTGAGGAGTTAAGGTGTCCAATATCTCTGCAACTTATGTATGATCCTGTTATAATTGCTTCTGGGCAAACATATGAGAGGGTTTGCATAGAGAAATGGTTCTGTGATGGACACAACACCTGCCCAAAGACTCAACAGAAACTTGCACATCTATCATTGACCCCTAATTACTGTGTTAAGGGTCTTGTTGCTAGTTGGTGTGAACAAAATGGAGTTCCTATTCCTGATGGCCCTCCTGAATCTCTTGACTTTAACTACTGGAGATTAGCATTATCTCAGTCTGAACCAACAAATTCGAGATCTGTGAACAGTGTCAACTCTTGTAAATTGAAGGGTGTCAAAGTGGTTCCTTTAGAAGAGACTGGGATCTCACATGAAGCCGGAGAAAATGGAACTGAAAGTGTGTCTGCACAAGAGGAAGATACTGAGCAGTATCTTAGTTTTCTGAAAGTCTTGACTGAAGGGAACAGTTGGAAAAGGAAATGTAAAGGGGTAGAAAGGTTAAGGCTTTTGCTGAGGGATGATGAAGAAGGCAGGATTTTTATGGGGGCGAATGGGTTTGTTGAAGCACTTCTGCAGTTTCTGCGATCAGCAGTGTCTGCAGGGAATGCGACGGCTCAAGAAAGTGGAGCAATGGCCCTCTTTAACCTTGCTGTGAATAACAACAGGAATAAGGAGATCATGTTAGCAGAAGGAGTACTATCATTGCTAGAGGATATGATCTCTAATTCCTTCTCTTACGGCTGTGCGACGGCCCTCTATCTGAATCTCTCTTGCCTTGAAGAAGCCAAGCCTATGATTGGCAGGAGTCAGGCTGTCCAGTTCCTCATCCAGCTCCTCTTTCAACCTGACATTGAAGTCCTGTGCAAGCAAGATTCCCTTCATGCACTGTATAATCTATCCACTGTACCCTCCAATATTCCGAACCTCCTTTCATCTGGCATCATCAATGGCCTTCAATCCCTCCTTGCAGGCCAGGGTGACTGTATTGAGACTGAAAAATGCATGGCTATTTTGATCAATTTGGCTGCTTCTCAATTGGGAAGGGAGGAAATGATATCATCTCCGGGGCTCATAGGCGCGTTGGCTACCATATTGGACACCGGTGAGCTCGTAGAGCAAGAGCAAGCTCTATCTTGTCTACTAATTTTATGCAGCGGGAACGAAATATGTAGCCAGATGGTCCTGCAAGAAGGCGTAATACCCGCATTGGTATCGTTATCGGTGAATGGTACCTCAAGAGGAAGGGAGAAAGCTCAGAAACTCTTGATGCTGTTCAGAGAGCAGCGACAGCAAGACAATTCGCCTCCTAAGACACACCAGTTCACGCCCAAAACTAGCGATATAAAGATGCCGCTTCCGGAAACAAAACCGCTATTGTTAGGATCCATCCATGTGTGGTAA 2241 0.4324 MDIAEVEENMFAASDAKLHGELCKALSASYFKVLSIFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALENSLKRVEDIVPQSIGCQIEEILSELESMELALDPMEKQIGDNLITLLQQGRKFSDSTDSSELECFHRAATRLGITSSRAALTERRAIKKHIERARAEDDKRKESIVAYLLHLMRKYSKLFRSEFSDDNDSQASTPCSPTVMGSIEDGVSCGHYQAFDQQLSKLSSFNFKPNNRKSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFCDGHNTCPKTQQKLAHLSLTPNYCVKGLVASWCEQNGVPIPDGPPESLDFNYWRLALSQSEPTNSRSVNSVNSCKLKGVKVVPLEETGISHEAGENGTESVSAQEEDTEQYLSFLKVLTEGNSWKRKCKGVERLRLLLRDDEEGRIFMGANGFVEALLQFLRSAVSAGNATAQESGAMALFNLAVNNNRNKEIMLAEGVLSLLEDMISNSFSYGCATALYLNLSCLEEAKPMIGRSQAVQFLIQLLFQPDIEVLCKQDSLHALYNLSTVPSNIPNLLSSGIINGLQSLLAGQGDCIETEKCMAILINLAASQLGREEMISSPGLIGALATILDTGELVEQEQALSCLLILCSGNEICSQMVLQEGVIPALVSLSVNGTSRGREKAQKLLMLFREQRQQDNSPPKTHQFTPKTSDIKMPLPETKPLLLGSIHVW 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0919 746 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Lele47g0919 746 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Lele47g0919 746 SUPERFAMILY RING/U-box 277 355 - -
Lele47g0919 746 SMART arm_5 539 581 IPR000225 GO:0005515
Lele47g0919 746 SMART arm_5 454 498 IPR000225 GO:0005515
Lele47g0919 746 CDD RING-Ubox_PUB 283 325 IPR045210 -
Lele47g0919 746 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Lele47g0919 746 PANTHER U BOX DOMAIN-CONTAINING 28 708 - -
Lele47g0919 746 Gene3D - 424 723 IPR011989 -
Lele47g0919 746 MobiDBLite consensus disorder prediction 708 728 - -
Lele47g0919 746 MobiDBLite consensus disorder prediction 708 725 - -
Lele47g0919 746 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Lele47g0919 746 Coils Coil 116 136 - -
Lele47g0919 746 SUPERFAMILY ARM repeat 429 702 IPR016024 -
Lele47g0919 746 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Lele47g0919 746 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0919 Lele-ChrLele47 15322249 15325895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0919 1 738 U-box Gene Family AT1G24330 66.622 0.0 1000