Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0872 ATGGAGCGGTACAGCCGGACCATTGAAGGGTCGCAGTCTGATCCGTCACCGGAATGGACCGGAACGGGAGGCGAAACAGGGCTCGAAAAGTCAGTGTGGCAATTGGAATTGGGTGGCGGTGAATCGTACCCGCAACGGCCCGATGAGGCTGATTGTATCTACTATTTGAGGACTGGTTTTTGTGGGTACGGTTTGCGATGTCGGTTCAATCATCCCCGAGACCGTGGCGCGGTTATTGGAGCTGCGAGGACGGGAGGGGAGTACCCAGAAAGAGCAGGCCAGCCTGTATGCCAGTATTATATGAGAACAGGATCTTGCAAATTCGGTCCCTCCTGCAAGTATCACCATCCTAGGCAGGGAGGAGGCACTGCTGGCCATGTGTCACTAAATTATTATGGATTTCCAATGCGACCGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACGGGACAATGCAAGTTTGGCGCAACTTGTAAATTCCACCATCCACAGCCTGATGGCATGCAAATTCCAGCACAAACACCAGTTGCCCCTTCACCATTATATCCAACTGTACAGCCTCCATCTGGCCCTTCATCATCACAATATGGTTTAATGGTTGCAACTCCAAGGCCACCTCTGCTACCTGGCTCATTAGTCCATAGTCCCTATGGGCATGTGGTTTTGTCCCCAGCTGTAGTCCCTTTTCCAGGTTGGAGTCCTTATCAGCCTCCTGGAAGCCCCTTAGTTCCCTCAAGTACTCCATCTAATGTTGGTTCGGCACAGCTTTTTGGGATAGGCCAGCTACCTTCATTGGCATCAACTTATACTGGACAGTATCAACCTTCAGGCTCCTCATTTGGTCCTTCTGGCAGTAGTCAAAAGGAACACTCATTTCCAGAACGACCTGGTCAGCCAGAATGTCAGTATTATATGAAAACGGGGGAGTGTAGATTTGGTCCATCATGTAGATATCATCATCCACCTGAATTAGTTGCTCCAAAAACGAATGTGGTCCTTAGTCCTGTGGGCCTTCCTTTGCGCCCGGGTGCGCCTCCTTGCACTCATTACGCACAGCGTGGGGTGTGTAAGTTCGGGCCAGCATGCAAATTTGATCATCCTATTGGAGCACTGAGTTATAGTCCGTCTGCTTCCTCCCTAGCTGATATGCCAGTCGCGCCCTATCCTGTGGGCTCATCAATGGGCACTCTTGCTCTGTCATCTTCATCATCAGAATTGCGGCCTGAACTCTCCTTAGGATCCGGCAAGGAGTCTGCATCGTCCAGAATATCTTCGTCAATGAGCACATCGACAGCATCGGTTGGCTTGACCTTGTCATCTGGTGGATCCATTTCTCAATCAACTGCACAACAATCTGCTCAGAGTTCCAGTCCTTCAGCAATCACCGATAGCACTGCCACAAGCAGCTCCGTCCCTCACACCTCTAGTTAA 1431 0.5045 MERYSRTIEGSQSDPSPEWTGTGGETGLEKSVWQLELGGGESYPQRPDEADCIYYLRTGFCGYGLRCRFNHPRDRGAVIGAARTGGEYPERAGQPVCQYYMRTGSCKFGPSCKYHHPRQGGGTAGHVSLNYYGFPMRPGEKECSYYVKTGQCKFGATCKFHHPQPDGMQIPAQTPVAPSPLYPTVQPPSGPSSSQYGLMVATPRPPLLPGSLVHSPYGHVVLSPAVVPFPGWSPYQPPGSPLVPSSTPSNVGSAQLFGIGQLPSLASTYTGQYQPSGSSFGPSGSSQKEHSFPERPGQPECQYYMKTGECRFGPSCRYHHPPELVAPKTNVVLSPVGLPLRPGAPPCTHYAQRGVCKFGPACKFDHPIGALSYSPSASSLADMPVAPYPVGSSMGTLALSSSSSELRPELSLGSGKESASSRISSSMSTSTASVGLTLSSGGSISQSTAQQSAQSSSPSAITDSTATSSSVPHTSS 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0872 476 PANTHER PROTEIN PHOSPHATASE RELATED 33 398 - -
Lele47g0872 476 Gene3D - 123 170 - -
Lele47g0872 476 ProSiteProfiles Zinc finger C3H1-type profile. 295 323 IPR000571 GO:0046872
Lele47g0872 476 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Lele47g0872 476 Gene3D - 284 370 - -
Lele47g0872 476 MobiDBLite consensus disorder prediction 1 25 - -
Lele47g0872 476 MobiDBLite consensus disorder prediction 268 292 - -
Lele47g0872 476 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872
Lele47g0872 476 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Lele47g0872 476 Gene3D - 44 122 - -
Lele47g0872 476 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Lele47g0872 476 SUPERFAMILY CCCH zinc finger 345 371 IPR036855 GO:0046872
Lele47g0872 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Lele47g0872 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 164 IPR000571 GO:0046872
Lele47g0872 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Lele47g0872 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 344 367 IPR000571 GO:0046872
Lele47g0872 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 297 322 IPR000571 GO:0046872
Lele47g0872 476 SUPERFAMILY CCCH zinc finger 299 323 IPR036855 GO:0046872
Lele47g0872 476 ProSiteProfiles Zinc finger C3H1-type profile. 341 369 IPR000571 GO:0046872
Lele47g0872 476 MobiDBLite consensus disorder prediction 407 476 - -
Lele47g0872 476 SUPERFAMILY CCCH zinc finger 138 166 IPR036855 GO:0046872
Lele47g0872 476 FunFam CCCH type zinc finger protein 293 378 - -
Lele47g0872 476 MobiDBLite consensus disorder prediction 268 298 - -
Lele47g0872 476 SUPERFAMILY CCCH zinc finger 94 118 IPR036855 GO:0046872
Lele47g0872 476 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Lele47g0872 476 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Lele47g0872 476 SMART c3hfinal6 341 368 IPR000571 GO:0046872
Lele47g0872 476 SMART c3hfinal6 137 164 IPR000571 GO:0046872
Lele47g0872 476 SMART c3hfinal6 295 322 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0872 Lele-ChrLele47 14964538 14969703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0872 1 428 C2H2 Transcription Factor Family AT5G18550 56.071 3.52e-149 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele47g0872 zf-CCCH 3.6e-08 CL0537