Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0863 ATGCGGCTATACAATACAAACTCTCGGCTTCTTATCACTGGTACACTTCTGCAGAACAATCTCCATGAGCTCTGGGCTCTTCTCAATTTTCTTCTTCCAGAAATTTTTGGTTCTTCTGAAACTTTTGATGAGTGGTTTCAAATCTCTGGTGAAAATGACCAGCAAGAGGTCGTTCAACAATTGCACAAGGTTCTCCGCCCATTTCTCCTTCGAAGGTTAAAGTCAGATGTTGAGAAGGGTTTGCCACCAAAAAAAGAAACCATTCTCAAAGTAGGAATGTCACAAATGCAGAAACAATATTACAGGGCTTTACTGCAGAAGGATCTTGAGGTTGTCAATGCTGGTGGAGAGCGAAAACGTCTCCTAAATATAGCTATGCAACTGCGTAAATGTTGTAATCACCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCTTATACCACTGGAGATCATCTCATTACCAATGCTGGTAAAATGGTTCTTTTGGATAAATTGCTGCCTAAATTAAAAGAGCGAGACTCTAGGGTGCTTATATTTTCACAGATGACCAGGCTCCTAGACATACTTGAAGATTACTTGATGTTTCGTGGATATCAATATTGCCGCATTGATGGTAATACGGGTGGAGATGATCGTGATGCTTCTATTGAATCTTTCAATAAACCTGGAAGTGAAAAATTTGTCTTCTTATTATCGACTCGGGCTGGAGGTCTTGGCATTAATCTTGCTACTGCAGATGTTGTCATTCTATATGACAGTGATTGGTCAGTATTTTTTGAATTATCTGTACCCTACTTTTTCTCTCTGTTGATGGTTGGTGGTTTCATTACAGGAACCCACAAGTTGACTTACAGGCCCAGGACCGGGCTCATAGGATTGGCCAAAAGAAAGAAGTTCAAGTTTTCCGTTTCTGCACTGAGAGCTTACAAAAAGCTTGCGCTCGATGCACTGGTGATTCTGCAAGGGCGACTAGCTGAGCAGAAGACTGTAAATAAAGATGAGTTGCTTCAAATGGTCAGATTTGGTGCTGAAATGGTTTTCAGTTCAAAGGATAGTACAATTACAGATGAGGATATTGACAGAGTTATTGCTAAAGGAGAAGAAGCAACAGCTGAACTTGACGCCAAGATGAAGAAATTTACTGAAGATGCAATCAAGTTTAAGATGGATGACACTACTGAGTTGTATGATTTTGATGCTGATAAGGATGAGAGCAAATTTGATTTCAAAAAAATCGTCAGCTAA 1248 0.4014 MRLYNTNSRLLITGTLLQNNLHELWALLNFLLPEIFGSSETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIESFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWSVFFELSVPYFFSLLMVGGFITGTHKLTYRPRTGLIGLAKRKKFKFSVSALRAYKKLALDALVILQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRVIAKGEEATAELDAKMKKFTEDAIKFKMDDTTELYDFDADKDESKFDFKKIVS 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0863 415 Gene3D - 306 383 IPR027417 -
Lele47g0863 415 Gene3D - 78 262 IPR027417 -
Lele47g0863 415 SMART helicmild6 188 343 IPR001650 -
Lele47g0863 415 CDD SF2_C_SNF 158 256 - -
Lele47g0863 415 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1 257 - -
Lele47g0863 415 Pfam Helicase conserved C-terminal domain 160 258 IPR001650 -
Lele47g0863 415 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 162 337 IPR001650 -
Lele47g0863 415 Pfam SNF2-related domain 4 137 IPR000330 GO:0005524|GO:0140658
Lele47g0863 415 Gene3D - 1 73 IPR038718 -
Lele47g0863 415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 258 IPR027417 -
Lele47g0863 415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 82 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0863 Lele-ChrLele47 14897945 14900760 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0863 157 261 RAD5 or RAD16-like Gene Family AT5G22750 32.381 8.48e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele47g0863 SNF2_N 2.9e-32 CL0023