Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0862 ATGAAGAGTACCTCAAAGAAGAAGATACTGGTGACACAACCATCATGTATTCAAGGGAAGATGAGGGATTACCAACTTGCCGGTCTAAACTGGCTTATAAGATTGTATGAGAATGGTATAAACGGAATTCTGGCAGATGAAATGGGGCTCGGTAAAACATTGCAAACTATCTCTTTATTGGGTTATTTGCATGAGTTTAGACGAATCAAAGGTCCTCATATGGTAGTTGCTGCAAAATCCACTCTTGGAAATTGGATGAATGAAATTCGGCGCTTTTGTCCTCTTCTGCATCCAATTAAGTTTCTTGGCAATCCTGATGAAAGGAGACACATCAGGAGGAATTATTGGTTGCTGGGAAGTTTGATGTATGTGTTACAAGTTTTGAGATGGCAATCAAGGAGAAGTCTGCATTTTGCCGTCTTAGTTGGCAGTACATAA 438 0.3995 MKSTSKKKILVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRRIKGPHMVVAAKSTLGNWMNEIRRFCPLLHPIKFLGNPDERRHIRRNYWLLGSLMYVLQVLRWQSRRSLHFAVLVGST 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0862 145 Gene3D - 1 144 IPR038718 -
Lele47g0862 145 PANTHER SNF2/RAD54 HELICASE FAMILY 11 114 - -
Lele47g0862 145 Pfam SNF2-related domain 25 108 IPR000330 GO:0005524|GO:0140658
Lele47g0862 145 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 115 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0862 Lele-ChrLele47 14896615 14897891 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0862 14 92 RAD5 or RAD16-like Gene Family AT1G05120 36.905 4.16e-09 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele47g0862 SNF2_N 4.9e-16 CL0023