Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0857 ATGGAACGTCTCAGAATTGGCTCTGTTAAGCCATTGCCGTTGGTCTCTCAACTTCCGCCTCCTTCTGATGAACCTGTTGTTGCAATGGCTGACGCAGGGAAAACTATCTCCGGCAAACGTAGTAGACAGAGAGGTGTAGAGAGGAGCGAGAGCCTTGAGATTGAGCGTGATCGGAGGTTGAAGATGAGTCATATGTTCTCTGAGCTTCAATCCACCGTTCCTGGTCTCTTTTCCAAGGCCACAAGGGAAACGATTGTGAATGAAACAATAAACTACATCAAGGACCTTGAGAAGAAGAAGAAAAGATTGGAAGAGCTTAAGGGGCTAATAATGGAACCAGAAGCAGCTGGAGGGAAGTTGATGCTTCCATGTACAGGCAATAAGAATTCCTCCATTACAGTCTCTCTATTTGGAAATGTTGCCTTCTTTGAGATTCAATCAAAAGCTCAATTTGGTTTAATCACAGTGATCTTCAAGGTGTTCTACAAGCACGATGCTGAGATTTTGGCTGCAAATATTTCTGTCAACAACGGAGAATTGACATTGGCAATAACAGCTTTATTAGTTCATGATGGTGATAATAATGATGGAAATGTTGCAGCTGAGAAAATCAAGAGAGAGATTCTGGGTTTGTAG 636 0.4261 MERLRIGSVKPLPLVSQLPPPSDEPVVAMADAGKTISGKRSRQRGVERSESLEIERDRRLKMSHMFSELQSTVPGLFSKATRETIVNETINYIKDLEKKKKRLEELKGLIMEPEAAGGKLMLPCTGNKNSSITVSLFGNVAFFEIQSKAQFGLITVIFKVFYKHDAEILAANISVNNGELTLAITALLVHDGDNNDGNVAAEKIKREILGL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0857 211 Pfam Helix-loop-helix DNA-binding domain 52 97 IPR011598 GO:0046983
Lele47g0857 211 Coils Coil 86 106 - -
Lele47g0857 211 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 112 IPR036638 GO:0046983
Lele47g0857 211 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 96 IPR011598 GO:0046983
Lele47g0857 211 Gene3D - 39 110 IPR036638 GO:0046983
Lele47g0857 211 SMART finulus 52 102 IPR011598 GO:0046983
Lele47g0857 211 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 40 190 IPR044278 GO:0003700|GO:0006355|GO:0009960
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0857 Lele-ChrLele47 14873444 14874727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0857 13 104 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 39.583 4.37e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele47g0857 HLH 4.2e-07 No_clan