Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0854 ATGGGTTGTGTGTTCGGAAGAGAGGCGTCGGCGACGTTCGCCGGAGAGACGGTGTTGGAGAAGGGGAAAGCGAGGGAGGAGAGGAAAGAGGAAGTTGCCGCGGCTGCGAAAGCAGAAGTGAGCGAGGTTCAGAATGGTGGGAATCGGAAGGAAGGTGGAGAGGAGAAGAGTACACGGCCAAGAGGGGAAAGGCGGCGATCGTCACGGCCAAATCCAAGGCTGAGCAATCCACCTAACCATTTACACGGCGAGCAATTGGCGGCGGGTTGGCCGTCTTGGCTCTCCAAGGTTGCAGGGGAAGCCATCAACGGATTAACGCCTAGAAGAGCCGACGCTTTTGAAAAGCTCGATAAGATTGGCCAAGGCACATACAGTAATGTATACAAAGCCAGAGATACTATAACTGGGAAAATTGTTGCCTTAAAAAAGGTTCGATTTGACAATTTGGAGCCGGAGAGTGTGAAATTCATGGCCCGAGAGATTCTCATATTACGGCGACTGGATCATCCCAATGTTGTCAAACTGGAAGGTTTAGTGACTTCTAGAATGTCATGTAGCTTGTATCTTGTTTTTCCGTACATGGAGCATGATCTCGCTGGACTTGCTACCAGCCCATCAATTAAATTCACCGAGCCTCAGGTTAAGTGTTACATGAAGCAGCTGTTTTCTGGTCTGGAACACTGTCACAACCGTCATTTGCTGCATCGAGATATAAAGGGGTCAAACCTTCTCATTGACAATGAAGGGATTCTTAAAATTGCTGATTTTGGATTAGCTTCCTTCTTCGATCCCGATCACAAGCACCCTATGACAAGTAGGGTGGTGACTTTATGGTATCGACCTCCAGAGCTTCTTCTTGGGGCCACTGATTATGGTGTCGGAGTGGACCTCTGGAGTGCCGGTTGCATTCTTGCAGAATTGTTGGCCGGAAAGCCAATTTTGCCGGGTCGGACAGAGGTGGAGCAGCTACATAAGATATTTAAGCTATGTGGTTCTCCTTCTGAAGAGTATTGGAAAAAGTCAAAGTTGCCCCATGCTACCATTTTTAAGCCTCAACAATCATACAAGCGGAGCATATCCAACGTATTCAAGGATTTTCCACCATCATCCTTGCCACTAATCGAGACCCTTCTTGCAATTGATCCAGCCGAACGTCAGACTGCCACCGCTGCATTGCAAAGTGAATTCTTTACTACAAAACCTTATGCTTGTGAGCCATCAAACCTTCCAAAATATCCTCCCAGCAAGGAGATGGATGCAAAGCTACGAGATGAAGCAGCTAGAAGATTGAGAGCAGCGGGTAAAGCGAATGCTGATGGTGCTAAGAAATCTCGTCCACGTGACCGGGGAGGGAGGGGAATTCCAGTTCCAGAAGCCAATGCTGAGCTTCAAGCAAATATTGATAGACGGCGATTGATAACGCATGCAAATGCTAAGAGCAAGAGCGAGAAGTTTCCTCCGCCCCACCAGGACGGGACTCTAGGGTATACTCTGGGTTCTTCACATCACATGGATCCAGTTTTTGATCCTCCCGATGTTTCATTCAGCTCTACGAACTTGTCATACCCAAAGGCCAATATTCAAACATGGTCTGGTCCATTGGTAGAACCTGGTGGGGGTATGGGTGCCCCAAGGAGAAAGAAGAACATGGCAGGCGAATCGAAGTCGTCGAAGAAGGACTCAAGAAGATAA 1692 0.4823 MGCVFGREASATFAGETVLEKGKAREERKEEVAAAAKAEVSEVQNGGNRKEGGEEKSTRPRGERRRSSRPNPRLSNPPNHLHGEQLAAGWPSWLSKVAGEAINGLTPRRADAFEKLDKIGQGTYSNVYKARDTITGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFPYMEHDLAGLATSPSIKFTEPQVKCYMKQLFSGLEHCHNRHLLHRDIKGSNLLIDNEGILKIADFGLASFFDPDHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPILPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQSYKRSISNVFKDFPPSSLPLIETLLAIDPAERQTATAALQSEFFTTKPYACEPSNLPKYPPSKEMDAKLRDEAARRLRAAGKANADGAKKSRPRDRGGRGIPVPEANAELQANIDRRRLITHANAKSKSEKFPPPHQDGTLGYTLGSSHHMDPVFDPPDVSFSSTNLSYPKANIQTWSGPLVEPGGGMGAPRRKKNMAGESKSSKKDSRR 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0854 563 MobiDBLite consensus disorder prediction 431 452 - -
Lele47g0854 563 PANTHER CELL DIVISION PROTEIN KINASE 111 401 - -
Lele47g0854 563 FunFam probable serine/threonine-protein kinase At1g54610 100 195 - -
Lele47g0854 563 MobiDBLite consensus disorder prediction 19 82 - -
Lele47g0854 563 MobiDBLite consensus disorder prediction 548 563 - -
Lele47g0854 563 MobiDBLite consensus disorder prediction 431 563 - -
Lele47g0854 563 Gene3D Transferase(Phosphotransferase) domain 1 196 436 - -
Lele47g0854 563 Pfam Protein kinase domain 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele47g0854 563 ProSiteProfiles Protein kinase domain profile. 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele47g0854 563 Gene3D Phosphorylase Kinase; domain 1 101 195 - -
Lele47g0854 563 SUPERFAMILY Protein kinase-like (PK-like) 108 402 IPR011009 -
Lele47g0854 563 SMART serkin_6 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele47g0854 563 MobiDBLite consensus disorder prediction 512 528 - -
Lele47g0854 563 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Lele47g0854 563 MobiDBLite consensus disorder prediction 464 486 - -
Lele47g0854 563 FunFam probable serine/threonine-protein kinase At1g54610 196 437 - -
Lele47g0854 563 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524
Lele47g0854 563 CDD STKc_CDK9_like 113 397 - -
Lele47g0854 563 MobiDBLite consensus disorder prediction 19 36 - -
Lele47g0854 563 MobiDBLite consensus disorder prediction 48 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0854 Lele-ChrLele47 14846019 14852771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0854 108 435 Core Cell Cycle Gene Families AT5G10270 52.035 5.19e-118 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lele47g0854 Pkinase 3.4e-67 CL0016