Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0852 ATGCCTATAATTCGAAGCCTAATCCACGATATGAGATCCAGGTCGCGCCGTGTGGTGCAGGACGGTTCCTCAATGGAGGAGCCTGTCACTGATGGGTTGAAGCAGAGTTCTTGGGCCCACATGCCTCAGGAGCTTCTCAGGGAGGTTTTGCTCCGAATTGAGGACTCCGAGAGCTCTTGGCCGCCGCGCAAGAGTGTGGTGGCCTGCGCTGGAGTGTGCCGGAGTTGGAGGGAGATCACCAAGGAGATCGTCAAGCCGCCTGAAGTTTCTACCAAGATCACGTTCCCGATCTCCGTCAAGCAGCCTGGCCATAGAGATCATCTTCTTCAGTGCTTTATAAAGCGCAACCGCTCTTCACAAACCTATTATTTGTTCCTCAGTTTAACTAGTGCTCTAGCTGATGATGGGAAATTCCTTTTGGCTGCACGCAAGTGCAGGCGTCCAACCTGCACAGATTATATCATCTCTCTAGATGCTGATGATATGTCAAATGGAAGCTACACCTATATTGGGAAGCTGCGATCAAATTTTCTGGGGACAAAGTTCACAATATATGATGGGCAACCACCTCATGCAGGCGCAAAAATTTCAAAAAGTCGGTCCACTAGGCTGGTGAATCTGAAGCAAGTTTCACCCCGGGTCCCCACTGGTAACTACCCAGTGGCCCACATATCATATGAATTAAATGTGTTAGGCTCCAGGGGGCCTAGGAGAATGAATTGTGTGATGGATTCCATTCCTGCCTCTGCAATTGAACCAGGAGGGGTAGCGCCCACACAGACTGACTTTTCTCTAAGCAACATTGATGTGTTTCCTTCATTTCCATTTTTCCGGTCAAAATCAAATCACATGGAAAAATCCGAATCCTGGCCCCTGGGTGATAAAAAAGATGGGTAG 897 0.4894 MPIIRSLIHDMRSRSRRVVQDGSSMEEPVTDGLKQSSWAHMPQELLREVLLRIEDSESSWPPRKSVVACAGVCRSWREITKEIVKPPEVSTKITFPISVKQPGHRDHLLQCFIKRNRSSQTYYLFLSLTSALADDGKFLLAARKCRRPTCTDYIISLDADDMSNGSYTYIGKLRSNFLGTKFTIYDGQPPHAGAKISKSRSTRLVNLKQVSPRVPTGNYPVAHISYELNVLGSRGPRRMNCVMDSIPASAIEPGGVAPTQTDFSLSNIDVFPSFPFFRSKSNHMEKSESWPLGDKKDG 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0852 298 SUPERFAMILY Tubby C-terminal domain-like 87 268 IPR025659 -
Lele47g0852 298 Pfam F-box domain 38 84 IPR001810 GO:0005515
Lele47g0852 298 PRINTS Tubby superfamily signature 218 245 IPR000007 -
Lele47g0852 298 PRINTS Tubby superfamily signature 169 193 IPR000007 -
Lele47g0852 298 PRINTS Tubby superfamily signature 153 169 IPR000007 -
Lele47g0852 298 Gene3D Tubby Protein; Chain A 98 292 IPR025659 -
Lele47g0852 298 Pfam Tub family 99 281 IPR000007 -
Lele47g0852 298 PANTHER TUBBY-RELATED 24 263 - -
Lele47g0852 298 SUPERFAMILY F-box domain 30 81 IPR036047 GO:0005515
Lele47g0852 298 Gene3D - 31 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0852 Lele-ChrLele47 14839807 14842171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0852 12 269 TUB Transcription Factor Family AT2G47900 71.154 1.48e-134 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele47g0852 Tub 3.7e-57 CL0395