Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0813 ATGGCACTCCTGCAAAATTCACAAGTCATGTTTCCCAGATGGTTCGCCATTTCAGAACCATCAATCTCCAAGACATTGTTTCTAAAATTCCCTGTGTGTCCAATGTTTACTTCACTATCAATGTCAATTCTTGCCTCTTCCCCCACTCTTCGCTGCCACAGGTGCAGTTTCAGCTCCAATTCTTCTGAGGAATTCAATATTTCTTCTCCAGCCAAAATCTTCATTAAAGGGCTTCCTCTGTCAACTTCAGGAGGACGTTTGTTTAAAGCATTTTCAGAGTTTGGTGAAGTTAGTCAAGTAAAGCTGCTCATGGATAAAGAATCTGAGCAGTTCCTAGGTATTGCATACATTTGGTTTGCCAAGGAAGAGTCTGCTCAATTGGCTGTGGAAAAGATGAATGGGAAGTTCTTCGATGGCAGGTTTATTGATGTCAGAATTTGGAAGGCTGGATCAACAAAAAATGGGAGGAACACAGCTCCATACAAGAAGAACACGAACACAATGCCTGTGCTCAATGCTGTTATTCTGGGCGCCAAATCCATACCTTTTGGATCCCTCTGGTGGTTTGTCTACGCCGGTTTCTCATGTTTCCTCGTCCTCTTCGCCGGCATCATGTCCGGCCTCACCCTCGGTCTCATGTCTCTCAGCGTCGTCGACCTTGAGATTCTTCAGCGTAGCGGTACTCCCGCTGAGAAAATGCAAGCAGCCGAGATCCTTCCTGTGGTTCAAAAGCAACACCAGCTTCTTGTAACCCTGCTTCTTTGCAATGCTGCAGCCATGGAGGCCCTTCCAATATACCTAGATAGAATATTTAATGAATACGTTGCTATCATACTCTCAGTCACTTTTGTTCTGTTTTTTGGAGAGGTTATCCCACAAGCAATTTGTACTCGATATGGTCTTGCTGTAGGTGCAAATGTTATTTGGCTTGTGCGAATTCTAATGATAATCTGTTATCCCATTGCTTATCCCATTGGAAAGATCCTGGATATCGTATTGGGACATAACGAGGCTTTATTTAGGCGTTCCCAGTTAAAAGCTCTTGTCTCCATCCATGGTAAGGAGGCTGGGAAAGGTGGTGAGCTCACGCATGATGAGACCACAATTATCAGTGGAGCTCTAGATTTGACTGAAAAGACTGCTCTGGAGGCCATGACTCCTATTGAATCAACATTTTCCTTGGATGTCAGTTCAAAGTTAGACTGGGAGGTAATGGGAAAAATTCTTGCTCGAGGACACAGCAGAGTTCCTGTCTATTCAGGACATCCAAAGAATATTATTGGGCTTCTGCTGGCAAGTGTCAAAAGTCTTCTCACTGTACGACCAGAAACAGATACCCCTGTTAGTGCTGTTTCCATCCGAAGAGTTCCACGAGTTCCATCAGATATGCCTCTTTATGATATACTGAATGAATTTCAAAAAGGTAGCAGTCACATGGCTGCTGTTATGAAGGTTAGGGGAACAGGCAAGACGACTCCAGCTACAGCTGAGGGACAGAAGAATGAAGAAGACAAGAGTAATGTTGGGGATTCACAGCTGACCACTCCTTTACTAATGAAGAAGTCAGAAAGTGTTATTGTAGACATTGACCAGCACTCAAATCCTCCCCATATCAATCAAACTTCTTCGAGTAAGGCCCCAACAAATGATATATTTTCAATGGATGCTGAAGATGAAGTGATAGGTATTATCACATTGGAAGATGTATTTGAAGAACTTCTGCAAGAGGAGATTGTAGATGAAACGGATGAATATGTTGATGTGCACAAGAGGATACGTGTAGCTGCCGCAGCTGCTGCTTCCTCAATGGCACGCTGTCCATCTATCCGGAGATTGACTGCCCTCAAGGGAGCAGGAGGCCAAACTAAGCAAGGGAGTACCAGTACCCCAAGAAAATCTACTGAAGATGAAAATAATGTTTCAAGGTTCCAAGGGCACTCTGTTGAGCCTCCTTAG 1956 0.4402 MALLQNSQVMFPRWFAISEPSISKTLFLKFPVCPMFTSLSMSILASSPTLRCHRCSFSSNSSEEFNISSPAKIFIKGLPLSTSGGRLFKAFSEFGEVSQVKLLMDKESEQFLGIAYIWFAKEESAQLAVEKMNGKFFDGRFIDVRIWKAGSTKNGRNTAPYKKNTNTMPVLNAVILGAKSIPFGSLWWFVYAGFSCFLVLFAGIMSGLTLGLMSLSVVDLEILQRSGTPAEKMQAAEILPVVQKQHQLLVTLLLCNAAAMEALPIYLDRIFNEYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANVIWLVRILMIICYPIAYPIGKILDIVLGHNEALFRRSQLKALVSIHGKEAGKGGELTHDETTIISGALDLTEKTALEAMTPIESTFSLDVSSKLDWEVMGKILARGHSRVPVYSGHPKNIIGLLLASVKSLLTVRPETDTPVSAVSIRRVPRVPSDMPLYDILNEFQKGSSHMAAVMKVRGTGKTTPATAEGQKNEEDKSNVGDSQLTTPLLMKKSESVIVDIDQHSNPPHINQTSSSKAPTNDIFSMDAEDEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSMARCPSIRRLTALKGAGGQTKQGSTSTPRKSTEDENNVSRFQGHSVEPP 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0813 651 CDD CBS_pair_CorC_HlyC_assoc 380 487 IPR044751 -
Lele47g0813 651 MobiDBLite consensus disorder prediction 619 645 - -
Lele47g0813 651 ProSiteProfiles CNNM transmembrane domain profile. 184 366 IPR002550 -
Lele47g0813 651 FunFam DUF21 domain-containing protein At4g14240-like 366 505 - -
Lele47g0813 651 PANTHER METAL TRANSPORTER CNNM 176 621 IPR045095 GO:0010960
Lele47g0813 651 SMART rrm1_1 72 145 IPR000504 GO:0003723
Lele47g0813 651 Gene3D - 525 581 IPR046342 -
Lele47g0813 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 149 IPR000504 GO:0003723
Lele47g0813 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 142 IPR000504 GO:0003723
Lele47g0813 651 SUPERFAMILY RNA-binding domain, RBD 61 151 IPR035979 GO:0003676
Lele47g0813 651 CDD RRM_SF 73 145 - -
Lele47g0813 651 MobiDBLite consensus disorder prediction 489 513 - -
Lele47g0813 651 Gene3D - 54 158 IPR012677 -
Lele47g0813 651 Gene3D - 366 503 IPR046342 -
Lele47g0813 651 MobiDBLite consensus disorder prediction 614 651 - -
Lele47g0813 651 Pfam Cyclin M transmembrane N-terminal domain 195 365 IPR002550 -
Lele47g0813 651 SUPERFAMILY CBS-domain pair 370 575 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0813 Lele-ChrLele47 14523497 14531328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0813 59 347 Eukaryotic Initiation Factors Gene Family AT1G22760 25.466 5.31e-09 57.4