Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0808 ATGGGAATTTCTTCCAGTAGCGGAAGAAGAAGCAATTATTTCCATAACCCACATCTTCCGCCACCTTTCTATTACTTGGCAGAATCTCCTCCTCCGCCGCCGCCTCCTCCTCCTCAAGGCTACTATTTTACCTCATCAACACCTTATGCACTGCAAATAAACAACTATGTGCCTCCCCCTCTTCAGACCCATATCTGCTGTTACTCAAATGCGTATAGCAATTGTTGCAATTATTCTAACTCTATGGCGGGTAGGTTTCAGTATCCCCCATCTTATTATGTAAATCATGCTAATGGATGGCCTGCAGTTAATTCTTCGGTTGCTCTTGTCGTCTCGCCACCGCCCTATGTTGATCATCGAACGGCTAAGAAGATCAGGAACGATGTGAACGTGCATAAAGATACATTGCGGCTGCAGGTAGATGAGCATTACCCTGATCAGCGCTTGGTTTCATTCGATTTTGATGCCTTACATGATGGGAGCATTACTATAATCTACTTTGCGAAGGCGGAGAGCAAATGTAGGTTTGTACCATTGTTTCCCAATGTATTTGAGCCAATGAGAATCCCTTTTCAGAAAGGAATAGACCAGAAATTTTGTCAGCCCTCAGGAACAGGCATTGACAAAGAGTTTTTCGAGTTGGATGATCTGTCAAAACCCTCACTTGGAGATGATGTCTTCCCCCTTGTGATATGTGCTGAAACGTGTTTGATAACTTCATCAGCAGATGAAAATCTTGGCAATTCCGTGGTAGATTATTCTCCTTGCATGCAGATTACTCAAGCCATCGTAGAGAAAGGCAATGGTGATGGTCCTTTACAAGTAAAAGTAGACAGGCAGATTCTGTGGATTGATGGGGTCCGTTATGAGTTAAGGGAGTTATATGGAATGGGAGGCTCAGCAGCAGCTGGTTTTGATGACAATTATTCTGGGAAGGAGTGCGTGATATGCATGACTGAACCAAAGGACACAGCTGTATTACCTTGTCGACACTTGTGCATGTGCAGTGACTGCGCACAAGTTTTGTGGCTTCAATCGAACAAATGCCCAATATGTCGCCAATCTATCGAGGAACTTATAGAAATTAAGATAAACAATGGTGATTCTTGGGATCTTAGATGCAATAAAGAGTCTGGAGCTAATATTGCCTTACAAGTTAGCATTTCTGTTGGGCAAAGTTCAGAATCTTCTAAGCTTGTACGGGTCAGAGGCTGCCAACTTCTTTGA 1227 0.4336 MGISSSSGRRSNYFHNPHLPPPFYYLAESPPPPPPPPPQGYYFTSSTPYALQINNYVPPPLQTHICCYSNAYSNCCNYSNSMAGRFQYPPSYYVNHANGWPAVNSSVALVVSPPPYVDHRTAKKIRNDVNVHKDTLRLQVDEHYPDQRLVSFDFDALHDGSITIIYFAKAESKCRFVPLFPNVFEPMRIPFQKGIDQKFCQPSGTGIDKEFFELDDLSKPSLGDDVFPLVICAETCLITSSADENLGNSVVDYSPCMQITQAIVEKGNGDGPLQVKVDRQILWIDGVRYELRELYGMGGSAAAGFDDNYSGKECVICMTEPKDTAVLPCRHLCMCSDCAQVLWLQSNKCPICRQSIEELIEIKINNGDSWDLRCNKESGANIALQVSISVGQSSESSKLVRVRGCQLL 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0808 408 SUPERFAMILY RING/U-box 308 359 - -
Lele47g0808 408 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 313 353 IPR045195 -
Lele47g0808 408 ProSiteProfiles Zinc finger RING-type profile. 314 353 IPR001841 -
Lele47g0808 408 Pfam Zinc finger, C3HC4 type (RING finger) 312 358 - -
Lele47g0808 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 369 IPR013083 -
Lele47g0808 408 FunFam probable E3 ubiquitin-protein ligase LOG2 298 363 - -
Lele47g0808 408 SMART ring_2 314 352 IPR001841 -
Lele47g0808 408 PANTHER MAHOGUNIN 39 363 IPR045194 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0808 Lele-ChrLele47 14479375 14484104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0808 74 368 C3H Transcription Factor Family AT3G06140 56.209 1.53e-103 309