Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0780 ATGGAATTTCAGTGCATGTTTTGTGGGGGTCCCCTTCCTGTTCCTTCCGTCATCAATGAGGCTATTTCTGGTGTCCAAAGCCTTTCTTTCAGTGTGCAAAGCACTCCGGAAAAAAATGGTCATTCAGGTGATGCATCAAGAAGTCCTGAACTCCTTCAAGAGTTCTTGAAATCTTGTCCTAAGAAGGAACTTCTTCGAGCGTGCTTTTATAAGGACAGAAAGAACATTTCATCAAAAAGAAAGATGCCAGAAACTAATTCAACCAGTAAGGTTGTCAAGAAACAGGACAACAAGAAAGTTTCTACTCTCAGCAACCAGCCCTCTACGAAGCAGCATAGGAAGAGAAAAGCCCCTACTAGGCTCAGACCAGTTCCCGATGATCCTTCTGATTCTGGACATTTAGACTCCTGGATCTGGATACTTAGATGTTGGAAGAAGCAGCTAAATGTGGCAAAAGATGCTCGGCGAGTTGATGTGCTCTGTTATAGGTTATATTTGAGTTATAGGCTCTTGGATGGGACTTCGAGGTTTAAAGAATTGCATGACATTGTACTCGAGGCAAAAGCAAAGCTAGAAACAGAAGTGGGTCCAGTTAATGGGACTTCTGATAAGATGGTGCGAGGCATTGTCAGCAGACTCTCTATTGCCAGTGAGGTGCAGAAACTTTGCTCTCGTGCTATTGAGAAAGCTGATGGGTGGTCGTCCGTTGTGAATCCAGATTCCATAGATGGTTCCCTTCCTCCTGCCTGCAAATTTGTTTTCGAAGAGGTAACGGCTTCCTCAGTCAAAATCATTTTGATTAACAAGTCCCCTGCATTTTCTAAGGACATTAAGGGCTACAAGCTCTGGTACTACAGGAGTAATGAGGAGTTGCTCGAAACCGATCCTGTTTGTGAGGTCCCAAATAATCAGAAGAGGATTCTGTTACCCAACCTCCAGCCAGGCACAGAATATACTTTTCGCATTATATCTTATACAGATATGGGTCAGCTGGGTTATTCTGAAGCCAAGTGTTTCACCAAGAGCGCTGATCCAGCTAAAAAAGGTCCCACTTTTCCAATTGATTTAGGTCGTAAAAAAGAGAACCTTGAAATTGGAGCCAGTTCATCTGTCTCCAAAAGAGAGCCCAATCCTACAGTAGCAGATTCAGGATTTAAGGTTCGAGACCTTGGGAAAGTTGTTGGTCGGGCTTGGACTAAAGATCGCGGTCCCTTGGAAGGGTTTTGCAGTGTTGATACAAAACATTGCTGTAGGGAAACTGAAATGGTAAAGCCTAAAATTTCAGAAGAGCAGTTGCCGGCAGTTTCACGGGGCCTTGATTTAAATGTTATTTCAGTGCCTGATCTGAATGAAGAACTAGTCCCTCCTTTTGAGTCTTCCAAGGATGAAGATAATGGCTGCACTTTGCAGAAGGCTGTCGAGGCAGATGATGACGCAGCTTCTCGATATGCACAGAAAAACAGTTTAGCAAAGTCTCACGGTAGTGGTGACTCCCATACCTGGATGAACGGGCCAACTGGAGAAGTTCCAACTGTTGACTTCCGCGTAGACACATGCAAGAAAAGGGTAGCTAGCATCAATGAAGAGACACATGATTGCAATAGTACTTTGGCGAATGGCTCTCCTCTCGGAGTGTCTGATGGAACATGCTCCTTGGATGAAAACTATGAGTATTGTGTGAAAGTATTTCGGTGGCTAGAATGTGAGGGTCACATCAAGCAAGAATTCCGGTTGAAGTTGCTAACATGGTTTAGTTTGAAGTCAACGGAGCAGGAACGCAGGGTTGTGAATACCTTCATTCAAACTCTGCTTGATGATCCATGTAGTTTGGCAGGGCAACTGATTGACTCATTTTCTGATATCATATCCAACAAGAGGCCCAGAAATGGATGA 1893 0.4406 MEFQCMFCGGPLPVPSVINEAISGVQSLSFSVQSTPEKNGHSGDASRSPELLQEFLKSCPKKELLRACFYKDRKNISSKRKMPETNSTSKVVKKQDNKKVSTLSNQPSTKQHRKRKAPTRLRPVPDDPSDSGHLDSWIWILRCWKKQLNVAKDARRVDVLCYRLYLSYRLLDGTSRFKELHDIVLEAKAKLETEVGPVNGTSDKMVRGIVSRLSIASEVQKLCSRAIEKADGWSSVVNPDSIDGSLPPACKFVFEEVTASSVKIILINKSPAFSKDIKGYKLWYYRSNEELLETDPVCEVPNNQKRILLPNLQPGTEYTFRIISYTDMGQLGYSEAKCFTKSADPAKKGPTFPIDLGRKKENLEIGASSSVSKREPNPTVADSGFKVRDLGKVVGRAWTKDRGPLEGFCSVDTKHCCRETEMVKPKISEEQLPAVSRGLDLNVISVPDLNEELVPPFESSKDEDNGCTLQKAVEADDDAASRYAQKNSLAKSHGSGDSHTWMNGPTGEVPTVDFRVDTCKKRVASINEETHDCNSTLANGSPLGVSDGTCSLDENYEYCVKVFRWLECEGHIKQEFRLKLLTWFSLKSTEQERRVVNTFIQTLLDDPCSLAGQLIDSFSDIISNKRPRNG 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0780 630 SUPERFAMILY Fibronectin type III 257 340 IPR036116 GO:0005515
Lele47g0780 630 Gene3D Immunoglobulins 244 351 IPR013783 -
Lele47g0780 630 MobiDBLite consensus disorder prediction 485 505 - -
Lele47g0780 630 CDD FN3 251 340 IPR003961 GO:0005515
Lele47g0780 630 PANTHER VIN3-LIKE PROTEIN 2-RELATED 139 630 IPR044514 GO:0010048|GO:0040029
Lele47g0780 630 MobiDBLite consensus disorder prediction 482 507 - -
Lele47g0780 630 MobiDBLite consensus disorder prediction 79 131 - -
Lele47g0780 630 Pfam Fibronectin type III domain 251 333 IPR003961 GO:0005515
Lele47g0780 630 ProSiteProfiles Fibronectin type-III domain profile. 247 345 IPR003961 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0780 Lele-ChrLele47 14137516 14141399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0780 140 630 PHD Gene Family AT3G24440 45.129 3.32e-125 381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g0611 45 4997819 5001330 Lele47g0780 47 14137516 14141399 hybridization
Lele46g0651 46 4702957 4706879 Lele47g0780 47 14137516 14141399 hybridization