Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0772 ATGGATAATATTGTGGAAGATGATGCAACGTACCCTCGAAAGCCCTACGTTTCGAACCGTCCTAACTATTCCCATCGCCAAGAGCATTTGATTCGCGCCGCTCCGTATCATCGCCCAGGGATGAGTCGATACGACGAAGACGGTGAAGATGAAGAAATGGATGAATATGATGTGGGGAATGACCAGGAGGACGACGATGGTGATGGTGAGAATGGTTATGGTATGAATATTGATAGCGATGACGGGTTTGAGAGAAACTCGAAGAAAAGGAAATTGCGGAATCCGTCTGTTTCGAACTATGAATTGGTACCTCATGGGAAGCTTTCACACGGGAATAGAAGCCCAGCTGATGAATGGACGGAGCATGCGACGTTTGTTCTGCTAGAGGTTTGGGGGGACAAATTTCTTCAACTTGGAAGAAAGAGCTTAAGGTCTGAGGATTGGCATGATGTGGCGGAGAAGTTTTCGGAGGAGCTGAAGATGGAGAGGACCGTGGCACAATGTAGGAACATGTTGGATAAACTTAAAAGAAGGTACAAGAAAGAGAAGGTGAAAATGGATGAAATGGGGTTGAATTCTAGTAAATGGGCTTATTTTAAGAAGATGGATATGTTAATGGCTTCATCAGCGAGGCAAGAATATGGACTTTCATGTGGAATGGATTCTGGGGAGTATATATTCATGAATACAAGGGTTTATTTAGATCGATCCAATGGGTTGGATGAGATGAGAGATAGCCCTGGGGAGTCAGAGACGTCTGAAGATGATTCAGATGGGCTTCCGCCGAGGAGGACTTGGGCTGTAGACAATGGTGAAGTCGAAAAGTCTTCCTTTAGGGAATTGGCGGATTCTATTCAGAAGTTTGGTAAAATATATGAGAAAATTGAGAATAGTAAGAGGAAGCAGATGATGGAATTAGAGAAGATGAGATTGGATTTTAATATGGAGTTAGATCTGCAGAAGAAGCAGATTTTGGAAAGAGCTCAAGCTGAAATTGCAAGCTTGCAAGAAGGAGATGAGGAGGATTCCGACACATCTGCTGAGAATGTCAGTGAATGA 1059 0.4363 MDNIVEDDATYPRKPYVSNRPNYSHRQEHLIRAAPYHRPGMSRYDEDGEDEEMDEYDVGNDQEDDDGDGENGYGMNIDSDDGFERNSKKRKLRNPSVSNYELVPHGKLSHGNRSPADEWTEHATFVLLEVWGDKFLQLGRKSLRSEDWHDVAEKFSEELKMERTVAQCRNMLDKLKRRYKKEKVKMDEMGLNSSKWAYFKKMDMLMASSARQEYGLSCGMDSGEYIFMNTRVYLDRSNGLDEMRDSPGESETSEDDSDGLPPRRTWAVDNGEVEKSSFRELADSIQKFGKIYEKIENSKRKQMMELEKMRLDFNMELDLQKKQILERAQAEIASLQEGDEEDSDTSAENVSE 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0772 352 Pfam Myb/SANT-like DNA-binding domain 117 204 IPR044822 -
Lele47g0772 352 MobiDBLite consensus disorder prediction 335 352 - -
Lele47g0772 352 MobiDBLite consensus disorder prediction 46 71 - -
Lele47g0772 352 Coils Coil 165 192 - -
Lele47g0772 352 MobiDBLite consensus disorder prediction 81 95 - -
Lele47g0772 352 MobiDBLite consensus disorder prediction 1 115 - -
Lele47g0772 352 MobiDBLite consensus disorder prediction 238 271 - -
Lele47g0772 352 Gene3D - 119 181 - -
Lele47g0772 352 MobiDBLite consensus disorder prediction 330 352 - -
Lele47g0772 352 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 109 339 IPR044823 -
Lele47g0772 352 MobiDBLite consensus disorder prediction 25 45 - -
Lele47g0772 352 MobiDBLite consensus disorder prediction 256 271 - -
Lele47g0772 352 Coils Coil 292 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0772 Lele-ChrLele47 14036567 14037625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0772 117 343 Trihelix Transcription Factor Family AT1G54060 29.740 1.46e-19 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lele47g0772 Myb_DNA-bind_4 2.7e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g0619 45 5104648 5105706 Lele47g0772 47 14036567 14037625 hybridization
Lele46g0662 46 4833947 4835002 Lele47g0772 47 14036567 14037625 hybridization