LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele47g0729	ATGGCTGAGTCACTTAGCTCAGAGGCTGACACTTCGCCTTCATCGTCTCACTCATCATTACCCAAATCTTCTTCTTCTTCTTCTTATACGTCTTCGTCTTCTTCTTCTTCTGCTCTACAGAAGAAGCTGAAGCGAGCCAGAGAAGATAGTAATAATAACAGCAAGCACCCTGTTTACAGAGGAGTCCGAATGCGAACGTGGGGTAAATGGGTATCCGAAATCCGCGAACCCAGAAAGAAAAATCGGATCTGGCTTGGCACTTTCGCCACCGCCGAGATGGCCGCCCGTGCCCACGACGTCGCCGCCCTCAGCATTAAAGGCAGCTCCGCCATCCTCAACTTCCCTGAGCTCGCCGCTTCCCTGCCCCGACCCGCCTCTAAATCTCCCCGGGATGTTCAATCCGCCGCCGCCAAAGCTGCCTCCATGGAGATACTCAACATCAATCCCACCCCCACAACCTCTTCGTCGTTCTCCGCTCTGTCTTCCTCCTCCGGCGATGTTTCCACCCCAGAGGAACTTGGCGAGATAGTAGAACTCCCATCACTGGGTACCAGCTTCCAAGAACCCGACCCGAATAATGATTTCGTGTTTTTCGACTCGGTAGATGGGTGGTCCTATCCTCACCCATGGTATAACAATTTCTATGATGATGAAAACAAGTACTGTGGTGGGTATTTCACCACATCAATGCAAGAAGAAGAAACAGAGGGTTTGATTCTTTGTGGCTTTGATGGCTTATTGTGGCAACATTAG	753	0.5086	MAESLSSEADTSPSSSHSSLPKSSSSSSYTSSSSSSSALQKKLKRAREDSNNNSKHPVYRGVRMRTWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALSIKGSSAILNFPELAASLPRPASKSPRDVQSAAAKAASMEILNINPTPTTSSSFSALSSSSGDVSTPEELGEIVELPSLGTSFQEPDPNNDFVFFDSVDGWSYPHPWYNNFYDDENKYCGGYFTTSMQEEETEGLILCGFDGLLWQH	250

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele47g0729	250	MobiDBLite	consensus disorder prediction	1	40	-	-
	Lele47g0729	250	PRINTS	Ethylene responsive element binding protein signature	81	97	IPR001471	GO:0003700\|GO:0006355
	Lele47g0729	250	PRINTS	Ethylene responsive element binding protein signature	59	70	IPR001471	GO:0003700\|GO:0006355
	Lele47g0729	250	FunFam	Ethylene-responsive transcription factor 2	57	116	-	-
	Lele47g0729	250	SMART	rav1_2	58	121	IPR001471	GO:0003700\|GO:0006355
	Lele47g0729	250	Gene3D	AP2/ERF domain	58	116	IPR036955	GO:0003700\|GO:0006355
	Lele47g0729	250	ProSiteProfiles	AP2/ERF domain profile.	58	115	IPR001471	GO:0003700\|GO:0006355
	Lele47g0729	250	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	31	186	-	-
	Lele47g0729	250	MobiDBLite	consensus disorder prediction	1	59	-	-
	Lele47g0729	250	SUPERFAMILY	DNA-binding domain	58	116	IPR016177	GO:0003677
	Lele47g0729	250	Pfam	AP2 domain	57	107	IPR001471	GO:0003700\|GO:0006355
	Lele47g0729	250	CDD	AP2	59	117	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele47g0729	Lele-ChrLele47	13431278	13432030	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele47g0729	20	210	AP2-EREBP Transcription Factor Family	AT5G11590	60.199	3.52e-65	201

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele47g0729		AP2	8.7e-14	CL0081