Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0685 ATGATGCTCGGTGAGTCCCATCACGCTAATCCAACGGTCCACGTTTCTCCTTGGCCCCTCCAACTAGATGATTTGACCTCCGATATCTGTTCACCTTACCCGGTTAGCGGTGTCTCCGTCGACTCCGACGGTTGTGCTAGCACCGGCGATTACTCGCCGCTTTACTTACAAGAGACTCTTTCGGCGCTGCAGCGTTATCTCCCATCCAACGACGCCGACATCGACTCTGATTCCGATGTTCCGTGTCGTGGTTCCGATGCTCCCGTCGATGCCTACACGTGCGATCATTTCCGGATGTACGAGTTCAAGGTGAGGAGGTGCGCGCGTGGTAGGTCACACGACTGGACGGAATGCCCTTATGCTCATCCAGGCGAGAAAGCTCGCCGTAGGGATCCGAGGAAGTATCACTATTCGGGGACTGCATGCCCTGATTTTCGCAAGGGGAGCTGTAAGAAGGGCGATTCTTGTGAGTTCGCTCATGGAGTATTTGAGTGTTGGCTTCACCCGTCTCGTTATCGTACGCAGCCGTGTAAGGATGGTACGAGCTGCCGGAGAAGGGTTTGCTTTTTTGCTCACACGCCGGACCAACTGAGGATTCTGCCTCAGCAGAGTCCAAGGAGTGGTAACTCTGTAGATTCGTACGACGGCTCTCCGTTGAGGCAGGCGATGGCGATTGAGTCTTGTTCTAAAACGCTGCCGTTCATGTCGTCTCCGTCTTCGATTTCACCTCCGGCTAGTTCTCCGACGGAGTCTCCTCCTGTGTCTCCGATGGCACAATCTCTGAGTCGGTCTGTTTGTTCGAGCTCCATCAGTGAGATGGTTGCTTCTCTGCGTAATTTGCAGCTAGGTAAGGCCAAGTCTTTGTCGTTATCCTCTTCTTGGAATGTTCCTATGGGATCTCCCTGTTTCGGGTCTCCGAGGGGATCCATACTCCGACCCGGATTCTGCAGCCTCCCCACCACCCCTACGCAGGCCCCAGCTCGCGCTGGCAGCAACTATTTTGATATTTGGGAGCAGAGTTATGAGGAGGAGCCGGTTATGGAGCGGGTAGAGTCCGGAAGGACCATAAGGGCAAAGATGTTCGAGAAATTGAGCAAAGAGAACTCCCTGGATAGGTCGGATTCGGGTTCATCGGGTGGAGCTCCGGATGTGGGGTGGATTTCGGAGCTGGTGAAGTGA 1179 0.5445 MMLGESHHANPTVHVSPWPLQLDDLTSDICSPYPVSGVSVDSDGCASTGDYSPLYLQETLSALQRYLPSNDADIDSDSDVPCRGSDAPVDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPSRYRTQPCKDGTSCRRRVCFFAHTPDQLRILPQQSPRSGNSVDSYDGSPLRQAMAIESCSKTLPFMSSPSSISPPASSPTESPPVSPMAQSLSRSVCSSSISEMVASLRNLQLGKAKSLSLSSSWNVPMGSPCFGSPRGSILRPGFCSLPTTPTQAPARAGSNYFDIWEQSYEEEPVMERVESGRTIRAKMFEKLSKENSLDRSDSGSSGGAPDVGWISELVK 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0685 392 FunFam Zinc finger CCCH domain-containing protein 66 94 162 - -
Lele47g0685 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 161 IPR000571 GO:0046872
Lele47g0685 392 MobiDBLite consensus disorder prediction 366 392 - -
Lele47g0685 392 SUPERFAMILY CCCH zinc finger 135 165 IPR036855 GO:0046872
Lele47g0685 392 Gene3D - 135 199 - -
Lele47g0685 392 SMART c3hfinal6 171 194 IPR000571 GO:0046872
Lele47g0685 392 SMART c3hfinal6 136 162 IPR000571 GO:0046872
Lele47g0685 392 ProSiteProfiles Zinc finger C3H1-type profile. 137 163 IPR000571 GO:0046872
Lele47g0685 392 PANTHER UNKEMPT FAMILY MEMBER 59 392 IPR045234 -
Lele47g0685 392 MobiDBLite consensus disorder prediction 234 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0685 Lele-ChrLele47 12334628 12335806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0685 92 256 C2H2 Transcription Factor Family AT5G12850 55.090 2.40e-56 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele47g0685 zf-CCCH 1.7e-06 CL0537