Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0659 ATGGTCCTTGACGATATACCATTTCGAGCATCTACGTTCATTGCTACCAAGCTGCAGAAGCCAATGGGAGCTCAAAGAAAAACGGCTCCTCAGCTTCGTGCCCTTCATAATTTTTATAAAGAGGAGAAGTATCCAACACAGAGAGCAATGAAAGACTTTGCGGGTGCTTTGGGGTTGACACATAAGCAAGTTCGAGATTGGTTTGTTGAGGAAAGGAGGAGAGGGAAGAAGGAAAATGGAGTGTTAGTAGCGTCATGTTCTTCTTCGGAAGCTAATTCTCCTTCGCCATCAGGATACAATGCAGTTATAAGTAGGAATGTTAAGAAGCAGAAAAAGCAGAAAAGTCATCAGGAGTTGCTTACGGCAAACTACATTGTAAAAAAGGTGTTCCACAAGGGTGGCCCTTCTTTAGATGAGGAATTTGATTCTCTTCCTCCAGGTCCATCCCTCCATCATGTTGGCCTGAACACTTCCTTTTCTGCTAGTGAAGAAGACCAAGGACCAATTAAAAAGAGAACGGTTTCCAAGAGCGCAATTGGAAGCCCCCCTGAATCAAATAAGAAAGCACCATTGAGAAACCATGGTATTGGAAAAGGTTTAATGACAGTATGGAGGGCTACAAATCCAGACGCGGGAGATGTTCCTATTGGCCTTGGTCTTGGTGATAAACCACGGAAAACACTAACTAATGCTGGAAGACAAAAAGCTAAACTACAGAATGTGAGAAATAAAATACAAGAAAAGAGGAAGGCTTTCATGCAAAGAAGAGTGGTAAAATATAACCAAGATGTGAGTCAGAATCAACCACAGAAGGAGAAATGTGAACTTGTTTTGGGTAGATTTATGCCTGAGGAGGATCTTGATCGAATGGCATTTTTAATTGATGATGAAGAGCTAGAGATGAGAGAGTTACAAGCAGGGTCAGATCCGCATATGTTTTCTGATCATCGTGCTTCCAGTGGAATTCTTGGCTGCTCTCTTTGTAAAGATGTGCTGTCTAAGTTTCCCCCAGATACTGTTGAGATGAAGAAACCCATCTGTTTGCAACCTTGGGACTCCTCTTCAGAGTCTGTCAAGAAACTTTTTAAGGTATTCCATTTTCTTTATACATATGCTACTGTTGTTAATATTTCCCCCTTCACTCTTGATGAGCTTGCTCAAGCGTTTCATGATAAGGAGTCAATGCTACTTGGAAAGATTCATGTGGCCCTTCTTACACTTCTTCTCTCTGACATTGAAGTGGAACTTACTAGTGGATTTCTGCCTCATTTAAATAAGTCATGCAATTTTCTTGCATTGCTTCACTCGGTTGAAAATCAAGAATATTCTCTAGACTTCTGGAAAAGATCTCTTAATCCCCTTACATGGATAGAAATACTACGACAAGTTTTGGTTGCTGCGGGTTTTGGTTCAAAACAATGTTCTTTGCAAAGAGAAGCGCATAACAAGGAATTGAATCTCCTAGTAAAGTTTGGCTTATGTGCTGGTACTTTGAAGGGCGAGTTGTTTAAGATTTTGTTAGCACAAGGAAATAATGGGTCAAAAGTATCTGAGCTGGCAAAGTCAATGCAGATTGTTGAATTGAACCTTGCCAGCACAACAGAGGAGCTGGAATCTTTAATATATTCAACCCTGTCAAGTGACATTACTTTATTTGAAAAGATTTCATCATCTGCTTATCGACTGCGCATGAGCTCTTTTAAGAAGGATGTTGATGACATTCAGTCAGATACAGAAGACTCGGGAAGTGTAGATGATGAACTTAATCACGGTAATACATGGAGCAGTGGTGAGGATTTTGAATGTGATTCAGCGAACTCCAACTTAAGGAAATTGAAGCGTGGAAGCAACACTACAATGAAAAATAATATGCTTACAGCATCCACTGAAATTGATGAGAGCCATCCGGGAGAAGTGTGGCTATTAGGATTAATGGAGAGTGAATATTCAGATTTGAGCACTGAAGAAAAGTTGAATGCATTAGTGGCTCTTACTGATCTTCTTTCTTTTGGGTCCAGCATTAGGATGAAGGATCCAACAGAAGTTACTGCTGGTTACAGTTTGAGCATCCAGTTACGTGGTTCTGGAGCAAAAATAAAGAGGTCAATAGTAAAGAAGCCTGGGTCATATAATCAGATTGGACCCATGCATTATGTTAAAGAAGGGCATTCATCATTGAATCCTCACTCCTATCCAGTGGCTTCCTCATTATTATTCTCAAATATCCACAGTGAGGAGGAATTCTTTGAGATGGAGAATGGAGCAACTGAAATAGGTTTAACCAATTCACACCCCATTCAATCAGTGTTTTTGGGATCTGACCGCAGGTACAATAGATACTGGCTTTTCTTAGGGCCTTGCAATGCGGGTGACCCTGGCCATAGGAGAGTTTACTTTGAATCTTCTGAAGATGGTCACTGGGAAGTGATTGATAATGAAGAGGCTTTATGTACTTTGTTGTCAGTTTTGGATGATAGAGGTAAACGGGAGGCACTTCTTGTTGAATCTTTGGAGAAGCTGAAAGCCCCTCTTTGCAGAGCCATGTCCAAGATGATGGTCAACCATACTGGAATGTGTCATCCGTCAAATTCTGATCAATCTGATCTTGATAGGATCACAGAGGACAGTTATTCTCCAATATCTGATGTAGATAACCTGAGCCTGATTGAGACAGCCAGTAACTCTCTACCTTCAGCTGGCGCTGTGGTAATTGAAGCTGGGGAAAAGGGAGCAGAACAAATGCAAAAGTGGATCCGTCTTCAAGCATATGATTCATGGATTTGGAATTCCTTTTATTTAAATCTCAATGTTGTGAAATATGGTAGAAGGTCTTATATTGATTCTCTGGCCAGATGTGAGAGTTGTCACGATCTATTCTGGAGGGATGAGAGACACTGTAAAATTTGCCATTTGACATTTGAGCTTGATTTTGATCTTGAAGAAAGATATGCAATCCACACAGCCACGTGCAAGGAGAAAGAAAACAGTAACACTTTTCCAAATCACAAAATCTTATCATCGAAGATCCAGTCACTGAAAGCTGCAATTTATGCTATTGAGTCTGTTATGCCTGTAGATGCGCTGGTGGGTGCTTGGAGGAAGTCTGCTCACAAGCTATGGGTCAGACGACTCAGACGTACTTCAACTTTAACGGAGCTTTTTCAGGTTGTTGCTGATTTCGTTGGTGCTATCAATGAGGATTGGTTGTTTCGGTGCAGTCTTCCTGATGGTGTGGTTGATAAAATCATTGCTTCTTTTTCATTTATGCCCCTTACTTCATCAGCTCTTGCTCTATGGTTAGTGAAGTTGGATGCCATAATCGCTCCCTACCTGGACCAAGTCCAGCCTCTCAAGAAGCAGGACATTACTAAGAGAAAATTCTCTGGTGGACTTTAA 3396 0.4102 MVLDDIPFRASTFIATKLQKPMGAQRKTAPQLRALHNFYKEEKYPTQRAMKDFAGALGLTHKQVRDWFVEERRRGKKENGVLVASCSSSEANSPSPSGYNAVISRNVKKQKKQKSHQELLTANYIVKKVFHKGGPSLDEEFDSLPPGPSLHHVGLNTSFSASEEDQGPIKKRTVSKSAIGSPPESNKKAPLRNHGIGKGLMTVWRATNPDAGDVPIGLGLGDKPRKTLTNAGRQKAKLQNVRNKIQEKRKAFMQRRVVKYNQDVSQNQPQKEKCELVLGRFMPEEDLDRMAFLIDDEELEMRELQAGSDPHMFSDHRASSGILGCSLCKDVLSKFPPDTVEMKKPICLQPWDSSSESVKKLFKVFHFLYTYATVVNISPFTLDELAQAFHDKESMLLGKIHVALLTLLLSDIEVELTSGFLPHLNKSCNFLALLHSVENQEYSLDFWKRSLNPLTWIEILRQVLVAAGFGSKQCSLQREAHNKELNLLVKFGLCAGTLKGELFKILLAQGNNGSKVSELAKSMQIVELNLASTTEELESLIYSTLSSDITLFEKISSSAYRLRMSSFKKDVDDIQSDTEDSGSVDDELNHGNTWSSGEDFECDSANSNLRKLKRGSNTTMKNNMLTASTEIDESHPGEVWLLGLMESEYSDLSTEEKLNALVALTDLLSFGSSIRMKDPTEVTAGYSLSIQLRGSGAKIKRSIVKKPGSYNQIGPMHYVKEGHSSLNPHSYPVASSLLFSNIHSEEEFFEMENGATEIGLTNSHPIQSVFLGSDRRYNRYWLFLGPCNAGDPGHRRVYFESSEDGHWEVIDNEEALCTLLSVLDDRGKREALLVESLEKLKAPLCRAMSKMMVNHTGMCHPSNSDQSDLDRITEDSYSPISDVDNLSLIETASNSLPSAGAVVIEAGEKGAEQMQKWIRLQAYDSWIWNSFYLNLNVVKYGRRSYIDSLARCESCHDLFWRDERHCKICHLTFELDFDLEERYAIHTATCKEKENSNTFPNHKILSSKIQSLKAAIYAIESVMPVDALVGAWRKSAHKLWVRRLRRTSTLTELFQVVADFVGAINEDWLFRCSLPDGVVDKIIASFSFMPLTSSALALWLVKLDAIIAPYLDQVQPLKKQDITKRKFSGGL 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0659 1131 PANTHER HOMEOBOX PROTEIN SIX 246 1113 - -
Lele47g0659 1131 Gene3D - 14 95 - -
Lele47g0659 1131 SMART testlast3 355 414 IPR018501 -
Lele47g0659 1131 ProSiteProfiles DDT domain profile. 355 414 IPR018501 -
Lele47g0659 1131 MobiDBLite consensus disorder prediction 573 596 - -
Lele47g0659 1131 CDD homeodomain 25 79 IPR001356 GO:0003677
Lele47g0659 1131 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 767 840 IPR028941 -
Lele47g0659 1131 Pfam Homeodomain 27 77 IPR001356 GO:0003677
Lele47g0659 1131 SUPERFAMILY Homeodomain-like 25 79 IPR009057 -
Lele47g0659 1131 MobiDBLite consensus disorder prediction 137 194 - -
Lele47g0659 1131 SMART HOX_1 20 82 IPR001356 GO:0003677
Lele47g0659 1131 Coils Coil 228 255 - -
Lele47g0659 1131 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 636 672 IPR028942 -
Lele47g0659 1131 ProSiteProfiles 'Homeobox' domain profile. 28 78 IPR001356 GO:0003677
Lele47g0659 1131 Pfam DDT domain 356 411 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0659 Lele-ChrLele47 11298481 11308567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0659 27 147 Homeobox Transcription Factor Family AT5G44180 28.188 3.83e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lele47g0659 WSD 4.7e-13 No_clan