Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0564 ATGGCTTCTCTGCTACCATACGGCGACGTCGATTTCAGCTTGAGGGCAATGGCCGGTCGCGCTGAGGGATTTGGCCGCAACGCCATCGGTGGCCTCCACGGCGCCCTCTATTTCGTCACCACCCTCGCTGATGATGGTCCTGGATCCCTTCGGGAAGGATGTCGTAGAAAGGAGCCACTTTGGATTGTTTTTGAAGTTTCGGGTACAATTAATCTTTCATCATACTTGAGTGTATCATCTTACAAGACAATAGATGGCCGAGGCCAGAGCATAAAGCTCACAGGAAAGGGCTTAAGGTTGAAAGAAAGTGAGAATATAATTGTATGCAACCTTCAGTTTGAAGGTGGTAGGGGTCATGATGTTGATGGCATTCAAATAAAACCAAATTCTAGGAACATATGGATAGATCGCTGCAGCCTTCGTGATTATGATGATGGGCTTATAGACATTACCAGACAAAGCACGGATATTACTGTATCTAGATGTTACTTTGCACAGCATGATAAGACCATGCTAATTGGAGCTGACCCTACTCACATTGGCGATAGATGCATCCGGGTGACAATTCATCACTGCTTCTTTGATGGGACACGACAAAGACAACCTCGTGTTAGATTTGGAAAAGTTCATCTGTATAACAACTACACCAGAAACTGGGGTATATATGCTGTTTGTGCTAGTGTTGAGTCCCAGATATACTCTCAGTGCAACATTTATGAAGCAGGAACTAAGCAAAAGACTTTTGAATTCTATACGGAGAAGGCTGCTGATAAGGAGGAGCAGAAATCTGGCACCATAGTATCTGAAGGAGACATATTTCTGAATGGTGCACAGCCATGCTTACAAACACAACACACAGAAGGATGCTTGTTCCACCCTTCTGAATATTATCCAACTTGGACTATGGAAGCACCCTCACATTCTTTTAAAGATGTTCTGCAAATATGTGCAGGTTGGCAAGCTATTCCTAGGCCGGCTGAACTCTCACCTTCTTTGAATTAG 1002 0.4431 MASLLPYGDVDFSLRAMAGRAEGFGRNAIGGLHGALYFVTTLADDGPGSLREGCRRKEPLWIVFEVSGTINLSSYLSVSSYKTIDGRGQSIKLTGKGLRLKESENIIVCNLQFEGGRGHDVDGIQIKPNSRNIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPTHIGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGTKQKTFEFYTEKAADKEEQKSGTIVSEGDIFLNGAQPCLQTQHTEGCLFHPSEYYPTWTMEAPSHSFKDVLQICAGWQAIPRPAELSPSLN 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0564 333 Gene3D - 9 318 IPR012334 -
Lele47g0564 333 SMART amb_all 47 245 IPR002022 -
Lele47g0564 333 Pfam Pectate lyase 76 238 IPR002022 -
Lele47g0564 333 PRINTS Pollen allergen Amb family signature 222 241 IPR018082 -
Lele47g0564 333 PRINTS Pollen allergen Amb family signature 200 219 IPR018082 -
Lele47g0564 333 PRINTS Pollen allergen Amb family signature 20 37 IPR018082 -
Lele47g0564 333 SUPERFAMILY Pectin lyase-like 18 321 IPR011050 -
Lele47g0564 333 PANTHER PECTATE LYASE 18-RELATED 15 284 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0564 Lele-ChrLele47 5180081 5183642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0564 42 327 Polysaccharide Lyase AT3G55140 80.769 0.0 508