Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0550 ATGGGACAAAGAATTGGGACTCGACTCTTTGTGAGCAGATTATCATTCTTCACGACAGAAAGCCACCTCATAAATCTGTTTTCTCCATTTGGAAGAATTACAGAAGCTAGGCTAGTGAAGGACCCAAAAACTCAAAAGCCTAAAGGTTTTGGCTTTGTCTCCTATGATTCAGAAATTGAAGCAGAGAAGGCTATGAACAACATGAATGGCAGGATAATTGATGGTAGGCTGATTTTTGTAGAACCTGCAAAAGCTACAAGACCTAAAGAAGATGGTGATTCCTAA 285 0.3965 MGQRIGTRLFVSRLSFFTTESHLINLFSPFGRITEARLVKDPKTQKPKGFGFVSYDSEIEAEKAMNNMNGRIIDGRLIFVEPAKATRPKEDGDS 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0550 94 SMART rrm1_1 8 81 IPR000504 GO:0003723
Lele47g0550 94 Gene3D - 2 93 IPR012677 -
Lele47g0550 94 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 88 - -
Lele47g0550 94 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Lele47g0550 94 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Lele47g0550 94 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 8 85 - -
Lele47g0550 94 SUPERFAMILY RNA-binding domain, RBD 7 88 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0550 Lele-ChrLele47 4804293 4805803 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0550 6 90 Eukaryotic Initiation Factors Gene Family AT2G23350 36.471 2.31e-11 56.6