Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0548 ATGATGATATCAAGGGGGCTGTTCGGATGGTCCCCGCCCCATATACAGCCGCTTACTCCGGTGTCGGAGGTATCTGAGCCGCCAGAGTCGCCGTCGCCTTACTTGGACCCTGGAGCTGAGACCTCTGCCTCTCACCAGGTTGAAGTGGAGGAGGAGATCGAGGAGCCCGAGGAGATTGAACCACCGCCCGCTGCGGTGCCCTTCTCCAGGCTCTTTGCTTGCGCCGACCGGCTCGATTGGGTTCTGATGGTCGTCGGCTCCCTGGCAGCAGCCGCTCATGGTACGGCTCTCGTAGTTTACTTACACTACTTTGCGAAGATCATTAATGTCTTGAGGATGGATCCTTCGCAAGGTCCGTCAGACGAGCAATTCAACAAGTTCAAGGAGCTTGCTTTAACCATCGTTTATATCGCTGCTGGTGTTTTTGCTGCTGGTTGGATAGAGGTTTCATGCTGGATTTTGACTGGAGAACGGCAGACTGCGGTTATCAGATCAAAATATGTTCAAGTATTGCTTAACCAAGATATGAGTTTTTTTGATACATATGGGAATAATGGAGATATTGTGAGCCAAGTATTAAGTGATGTGCTGCTCATTCAGTCTGCACTTAGTGAAAAAGTGGGAAATTATATTCACAATATGGCTACGTTCTTCAGTGGACTTGTTATTGGATTTATCAACTGTTGGCAGATTGCATTGATAACATTAGCCACAGGTCCATTTATTGTTGCTGCTGGAGGAATATCAAATATATTCCTGCATAGGCTGGCAGAGAATATTCAAGATGCATATGCTGAAGCTGCTAGCATTGCTGAACAGGCTGTTTCTTATATCAGGACATTGTATGCATTTACAAATGAAACATTGGCTAAGTATTCATATGCGACATCACTTCAAGCTACTCTTAGATATGGTATCTTAATAAGTCTTGTTCAAGGGCTTGGTCTTGGATTTACGTATGGGCTTGCAATATGCTCGTGTGCTTTACAACTCTGGGTAGGAAGGTTCTTGGTTATGCATGACAAAGCTCATGGTGGTGAAATCATAACAGCTCTCTTTGCTGTTATTTTAAGTGGCCTGGGTTTGAATCAGGCAGCAACGAACTTCTACTCATTTGATCAAGGACGTATAGCTGCTTACAGATTGTATGAGATGATAAGCAGGTCATCCTCATCTGTTAATCATGATGGAACTGCCCCAGATTCTGTGCAAGGGAATATAGAGTTTAGGAATGTTTATTTTAGCTATCTATCACGTCCCGAAATCCCTATATTAAGTGGGTTTTATCTGACTGTTCCTGCTAAGAAAGCTGTTGCACTTGTTGGCAGAAATGGATCTGGAAAAAGCAGTATAATTCCACTCATGGAGCGGTTCTATGATCCCACATTAGGGGAGGTTCTTTTAGATGGTGAGAACATTAAGAATCTGAAACTGGAATGGCTAAGGAGCCAAATAGGACTAGTCACCCAGGAGCCTGCTTTGCTCAGCTTGAGTATAAGAGACAACATTGCTTATGGTCGGGATGCCACTATGGATCAAATTGAAGAGGCTGCCAAGATAGCCCATGCACATACATTCATCAGCTCATTAGGGAAAGGTTATGACACGCAGGTTGGAAGGGCCGGCTTGGCTTTGACAGAAGAACAGAAGATAAAGCTTTCTATTGCAAGAGCTGTGCTTTTAAATCCATCCATTCTTCTTCTTGATGAGGTAACTGGTGGACTTGACTTTGAGGCTGAAAAGGCTGTTCAGGAGGCTTTGGATCTTCTAATGTTGGGGCGTTCAACAATAATAATTGCTCGAAGGCTTAGTCTTATAAGGAATGCTGATTATATAGCTGTTATGGAGGAAGGTCAACTTGTTGAAATGGGTACTCATGATGAGTTAGTGACATTGGATGGCTTATATGCAGAACTCCTTCGATGTGAAGAGGCAGCAAAACTTCCCAAGAGGATGCCTGTTCGAAACTACAAGGAGACTGCAGCTTTCCAAATTGAGAAGGATTCGCCCTCAAGTCATAGCTTTAAAGAACCATCATCCCCAAAAATGATGAAGTCACCTTCCCTTCAGAGAGTTTCTAATGTATTTTGGTCTTCAGATGGCATCTATAACTCACAGGAATCACCAAATGTTCGGAGCCCACCACCAGAAAAGATGAATGGTCTGTCTATGGATGTAGCAGATAAGGAGCCTTCAATAAGAAGACAGGACAGTTTTGAAATGAGGCTACCAGAGTTGCCCAAAATTGATGTTCAGTCTGTGCATCGACAAAAATCTAATGGTTCTGACCCAGAATCCCCTGTTTCACCTCTTTTAACATCTGATCCCAAGAATGAGCGCTCCCACTCACAGACTTTTAGTAGACCCCATAGTGATTCTGATGATTTTTCATTGAAACTGAGAGAAGCAAAAGATACAAAGCATCGAAAACCTCCATCATTTTGGAGACTTGCTAAACTTAGTTTTGCAGAGTGGCTTTATGCTGTGTTAGGAAGCATAGGTGCTGCCATCTTTGGTTCTTTCAATCCTCTTCTTGCATATGTTATTGGTCTGGTGGTGACAGCCTACTATAGAATTGATGAAGTTCATCACCTCCGGCAGGAGGTAGATAAGTGGTGCTTGATTATTGCCTGCATGGGCATTGTGACAGTTGTTGCCAACTTCTTACAACATTTCTACTTTGGTATTATGGGGGAGAAAATGACAGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTACGCAATGAAGTTGGTTGGTTTGATGAAGAGGAAAACAGTGCTGACAATTTATCCATGCGTTTGGCCAATGATGCTACATTTGTACGAGCTGCTTTTAGCAACCGTCTTTCCATATTTATACAGGACAGTGCTGCAGTTATTGTGGCTGTTCTTATTGGTGCATTGCTGCACTGGCGGTTAGCACTCGTGGCATTAGCAACATTTCCCGTTCTCTGTGTTTCTGCAATTGCCCAGAAATTTTGGCTTGCTGGATTTTCAAGGGGCATACAAGAAATGCACAGAAAGGCATCTTTGGTTCTTGAAGATGCAGTTAGAAATATTTACACTGTTGTAGCATTTTGTGCTGGCAATAAGGTAATGGAACTCTATAGGCTGCAGCTTAAGAAAATATTTAAGCAGAGTTTTTTGCATGGGGTGGCCATTGGTTTTGCATTTGGCTTTTCACAGTTTCTACTTTTTGCTTGTAATGCCCTTTTGCTTTGGTACACTGCCATATGCATAAAAAATAGTTATATGGATCCACCTACTGCTCTCAAGGAATATATGAAACAGAGAATTGCGATAGCCAGGGTAGTGCTAAAGAATGCACCTATTTTGTTGTTGGATGAAGCTAGTTCATCAATTGAATCGGAGTCAAGCCGAGTGGTGCAAGAAGCTCTGGACACACTCATAATGGGAAACAAGACCACGATCCTGATAGCACATAGGGCTGCAATGATGAGGCACGTCGATAACATTGTTGTGCTAAATGGAGGACGAATAGTAGAGGAAGGAAGCCATGATTCATTGGTGGCAAAAAATGCCCTGTCAGGTGGGAAGCTTTCTGAGAGGCGAAAAATTTGTAACATTCAGAGCTCAGCTATCGGCATTGGAAGGCTAGGGAAGAGGAAATTATTGTGA 3642 0.4319 MMISRGLFGWSPPHIQPLTPVSEVSEPPESPSPYLDPGAETSASHQVEVEEEIEEPEEIEPPPAAVPFSRLFACADRLDWVLMVVGSLAAAAHGTALVVYLHYFAKIINVLRMDPSQGPSDEQFNKFKELALTIVYIAAGVFAAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGFINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVMHDKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSSSVNHDGTAPDSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATMDQIEEAAKIAHAHTFISSLGKGYDTQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAEKAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMEEGQLVEMGTHDELVTLDGLYAELLRCEEAAKLPKRMPVRNYKETAAFQIEKDSPSSHSFKEPSSPKMMKSPSLQRVSNVFWSSDGIYNSQESPNVRSPPPEKMNGLSMDVADKEPSIRRQDSFEMRLPELPKIDVQSVHRQKSNGSDPESPVSPLLTSDPKNERSHSQTFSRPHSDSDDFSLKLREAKDTKHRKPPSFWRLAKLSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLVVTAYYRIDEVHHLRQEVDKWCLIIACMGIVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVLIGALLHWRLALVALATFPVLCVSAIAQKFWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFKQSFLHGVAIGFAFGFSQFLLFACNALLLWYTAICIKNSYMDPPTALKEYMKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGSHDSLVAKNALSGGKLSERRKICNIQSSAIGIGRLGKRKLL 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0548 1213 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 84 374 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele47g0548 1213 MobiDBLite consensus disorder prediction 728 752 - -
Lele47g0548 1213 MobiDBLite consensus disorder prediction 753 780 - -
Lele47g0548 1213 Gene3D - 1089 1188 IPR027417 -
Lele47g0548 1213 SMART AAA_5 434 613 IPR003593 -
Lele47g0548 1213 SMART AAA_5 1040 1167 IPR003593 -
Lele47g0548 1213 Pfam ABC transporter 428 572 IPR003439 GO:0005524
Lele47g0548 1213 SUPERFAMILY ABC transporter transmembrane region 69 382 IPR036640 GO:0005524|GO:0016020
Lele47g0548 1213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 641 IPR027417 -
Lele47g0548 1213 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 829 1092 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele47g0548 1213 MobiDBLite consensus disorder prediction 705 795 - -
Lele47g0548 1213 MobiDBLite consensus disorder prediction 781 795 - -
Lele47g0548 1213 Gene3D - 397 650 IPR027417 -
Lele47g0548 1213 Gene3D ABC transporter type 1, transmembrane domain 61 388 IPR036640 GO:0005524|GO:0016020
Lele47g0548 1213 FunFam ABC transporter B family member 6 769 997 - -
Lele47g0548 1213 SUPERFAMILY ABC transporter transmembrane region 812 1091 IPR036640 GO:0005524|GO:0016020
Lele47g0548 1213 Coils Coil 253 273 - -
Lele47g0548 1213 MobiDBLite consensus disorder prediction 662 688 - -
Lele47g0548 1213 Gene3D ABC transporter type 1, transmembrane domain 770 1088 IPR036640 GO:0005524|GO:0016020
Lele47g0548 1213 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 407 642 IPR003439 GO:0005524
Lele47g0548 1213 FunFam ABC transporter B family member 20 70 409 - -
Lele47g0548 1213 FunFam ABC transporter B family member 20 397 644 - -
Lele47g0548 1213 MobiDBLite consensus disorder prediction 18 62 - -
Lele47g0548 1213 PANTHER ABC TRANSPORTER B FAMILY 48 840 - -
Lele47g0548 1213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1097 1182 IPR027417 -
Lele47g0548 1213 Pfam ABC transporter transmembrane region 85 357 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele47g0548 1213 Pfam ABC transporter transmembrane region 834 1092 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele47g0548 1213 MobiDBLite consensus disorder prediction 665 688 - -
Lele47g0548 1213 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 903 1190 IPR003439 GO:0005524
Lele47g0548 1213 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 382 - -
Lele47g0548 1213 CDD ABC_6TM_Pgp_ABCB1_D2_like 818 1096 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0548 Lele-ChrLele47 4773966 4786197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0548 53 691 Calmodulin-binding Proteins AT2G36910 45.146 5.09e-172 541