Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0545 ATGGTACTCTCCAACAAGAAGCTTAAACATAAGCTTAGAGCGGAGTTAGCTCAATCTCAGCCCGCAAATCCAGATTCTTCTTTCAAAAATCTTCTTGACTCTGAGACCCTGAAAATCCGATTATCAAAGAGAGAGAAGCGTCGAAAGGCTCGCTCTTTGCTGCAACCGGAGACTACCCAAGAAGGTGATGATGGTCGTAGTGTTGATGAGAGTAAAGAAGGCGAGGGAACACAGAGGAAGAGGAAGGCTGAGGACAACGCTGTGGCTGATGGGGATGTGAAGGATGCGAAGAAATCAAAGAAGAAACGTGATAAGAAGAAGAAGAATAAGAACAAGAAAAAGTCCAAAACGGACCAGGAAAAGGTTGCTAATCCTGGGGATGATAAGGTAGAGGCTTCAGAGTTAACTAAGAGTAATGGCAGTGAACAGAATGTTAATGTTCCTACAAAAGTGTATGTTGGAGGAATTCCCTACTATTCAACTGAGGATGATATTCGAAGCTATTTCGAAGGCTGTGGCACAATTACTGAAATTGATTGCATGACTTTTCCCGAGACTGGCAAGTTTAGAGGGATCGCCCTTATTAGTTTTAAGACTGAAGCTGCTGCGAAACGAGCCTTGGCTCTTGATGGATCTGACATGGGAGGACTATTTCTTAAAATCCAACCATATAAAACAACTCGAACCATTAAAGCATCCGATTTCGCCCCGAAACCTGTGGAGGGATACAACAGAATATATGTTGGAAATTTGTCATGGGACATAACAGAGGATCAATTAAGGTCTCTATTCTCGAACTGCAGCATATCATCCATACGTTTTGGTATGGATAAGGAGACAGGAGAATTCCGAGGGTACGCCCACGTGGATTTCACCGAGAATCAATCGGTTACAACAGCACTTGCCTTGGATCAAAAGGTGATGTCTGGGAGACCTGTTAGGATAACTTGTGCAGTTCCTTTGAAGAAGCCATGGAAACAAACAACTGATGCTGCGCCTACTACTACGACGAACACCCAAGTTGAAAGTGAGAGGTCAAATTCCACTGGAAGTGGCAAAATGAAGAGGAGGACATGCTTTGAGTGTGGTGAAAAGGGACATATTTCTTCTGCATGCCCAAAGAAACAGAATGCTGATTCAGATACAACCTAG 1152 0.4349 MVLSNKKLKHKLRAELAQSQPANPDSSFKNLLDSETLKIRLSKREKRRKARSLLQPETTQEGDDGRSVDESKEGEGTQRKRKAEDNAVADGDVKDAKKSKKKRDKKKKNKNKKKSKTDQEKVANPGDDKVEASELTKSNGSEQNVNVPTKVYVGGIPYYSTEDDIRSYFEGCGTITEIDCMTFPETGKFRGIALISFKTEAAAKRALALDGSDMGGLFLKIQPYKTTRTIKASDFAPKPVEGYNRIYVGNLSWDITEDQLRSLFSNCSISSIRFGMDKETGEFRGYAHVDFTENQSVTTALALDQKVMSGRPVRITCAVPLKKPWKQTTDAAPTTTTNTQVESERSNSTGSGKMKRRTCFECGEKGHISSACPKKQNADSDTT 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0545 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 151 217 IPR000504 GO:0003723
Lele47g0545 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 246 313 IPR000504 GO:0003723
Lele47g0545 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 149 226 IPR000504 GO:0003723
Lele47g0545 383 MobiDBLite consensus disorder prediction 115 135 - -
Lele47g0545 383 MobiDBLite consensus disorder prediction 99 114 - -
Lele47g0545 383 ProSiteProfiles Zinc finger CCHC-type profile. 359 374 IPR001878 GO:0003676|GO:0008270
Lele47g0545 383 SUPERFAMILY RNA-binding domain, RBD 237 323 IPR035979 GO:0003676
Lele47g0545 383 Pfam Zinc knuckle 357 374 IPR001878 GO:0003676|GO:0008270
Lele47g0545 383 Gene3D - 231 326 IPR012677 -
Lele47g0545 383 MobiDBLite consensus disorder prediction 62 98 - -
Lele47g0545 383 Gene3D - 335 383 - -
Lele47g0545 383 MobiDBLite consensus disorder prediction 328 354 - -
Lele47g0545 383 MobiDBLite consensus disorder prediction 1 145 - -
Lele47g0545 383 Gene3D - 80 230 IPR012677 -
Lele47g0545 383 SMART rrm1_1 150 222 IPR000504 GO:0003723
Lele47g0545 383 SMART rrm1_1 245 316 IPR000504 GO:0003723
Lele47g0545 383 CDD RRM2_PHIP1 245 315 IPR034362 -
Lele47g0545 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 244 320 IPR000504 GO:0003723
Lele47g0545 383 SUPERFAMILY Retrovirus zinc finger-like domains 343 378 IPR036875 GO:0003676|GO:0008270
Lele47g0545 383 CDD RRM1_PHIP1 151 222 IPR034361 -
Lele47g0545 383 SMART c2hcfinal6 358 374 IPR001878 GO:0003676|GO:0008270
Lele47g0545 383 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 92 223 - -
Lele47g0545 383 SUPERFAMILY RNA-binding domain, RBD 148 227 IPR035979 GO:0003676
Lele47g0545 383 MobiDBLite consensus disorder prediction 326 355 - -
Lele47g0545 383 MobiDBLite consensus disorder prediction 19 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0545 Lele-ChrLele47 4680776 4684118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0545 149 318 Eukaryotic Initiation Factors Gene Family AT3G16380 29.282 2.30e-07 50.8