Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele47g0545 | ATGGTACTCTCCAACAAGAAGCTTAAACATAAGCTTAGAGCGGAGTTAGCTCAATCTCAGCCCGCAAATCCAGATTCTTCTTTCAAAAATCTTCTTGACTCTGAGACCCTGAAAATCCGATTATCAAAGAGAGAGAAGCGTCGAAAGGCTCGCTCTTTGCTGCAACCGGAGACTACCCAAGAAGGTGATGATGGTCGTAGTGTTGATGAGAGTAAAGAAGGCGAGGGAACACAGAGGAAGAGGAAGGCTGAGGACAACGCTGTGGCTGATGGGGATGTGAAGGATGCGAAGAAATCAAAGAAGAAACGTGATAAGAAGAAGAAGAATAAGAACAAGAAAAAGTCCAAAACGGACCAGGAAAAGGTTGCTAATCCTGGGGATGATAAGGTAGAGGCTTCAGAGTTAACTAAGAGTAATGGCAGTGAACAGAATGTTAATGTTCCTACAAAAGTGTATGTTGGAGGAATTCCCTACTATTCAACTGAGGATGATATTCGAAGCTATTTCGAAGGCTGTGGCACAATTACTGAAATTGATTGCATGACTTTTCCCGAGACTGGCAAGTTTAGAGGGATCGCCCTTATTAGTTTTAAGACTGAAGCTGCTGCGAAACGAGCCTTGGCTCTTGATGGATCTGACATGGGAGGACTATTTCTTAAAATCCAACCATATAAAACAACTCGAACCATTAAAGCATCCGATTTCGCCCCGAAACCTGTGGAGGGATACAACAGAATATATGTTGGAAATTTGTCATGGGACATAACAGAGGATCAATTAAGGTCTCTATTCTCGAACTGCAGCATATCATCCATACGTTTTGGTATGGATAAGGAGACAGGAGAATTCCGAGGGTACGCCCACGTGGATTTCACCGAGAATCAATCGGTTACAACAGCACTTGCCTTGGATCAAAAGGTGATGTCTGGGAGACCTGTTAGGATAACTTGTGCAGTTCCTTTGAAGAAGCCATGGAAACAAACAACTGATGCTGCGCCTACTACTACGACGAACACCCAAGTTGAAAGTGAGAGGTCAAATTCCACTGGAAGTGGCAAAATGAAGAGGAGGACATGCTTTGAGTGTGGTGAAAAGGGACATATTTCTTCTGCATGCCCAAAGAAACAGAATGCTGATTCAGATACAACCTAG | 1152 | 0.4349 | MVLSNKKLKHKLRAELAQSQPANPDSSFKNLLDSETLKIRLSKREKRRKARSLLQPETTQEGDDGRSVDESKEGEGTQRKRKAEDNAVADGDVKDAKKSKKKRDKKKKNKNKKKSKTDQEKVANPGDDKVEASELTKSNGSEQNVNVPTKVYVGGIPYYSTEDDIRSYFEGCGTITEIDCMTFPETGKFRGIALISFKTEAAAKRALALDGSDMGGLFLKIQPYKTTRTIKASDFAPKPVEGYNRIYVGNLSWDITEDQLRSLFSNCSISSIRFGMDKETGEFRGYAHVDFTENQSVTTALALDQKVMSGRPVRITCAVPLKKPWKQTTDAAPTTTTNTQVESERSNSTGSGKMKRRTCFECGEKGHISSACPKKQNADSDTT | 383 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele47g0545 | 383 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 151 | 217 | IPR000504 | GO:0003723 | |
Lele47g0545 | 383 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 246 | 313 | IPR000504 | GO:0003723 | |
Lele47g0545 | 383 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 149 | 226 | IPR000504 | GO:0003723 | |
Lele47g0545 | 383 | MobiDBLite | consensus disorder prediction | 115 | 135 | - | - | |
Lele47g0545 | 383 | MobiDBLite | consensus disorder prediction | 99 | 114 | - | - | |
Lele47g0545 | 383 | ProSiteProfiles | Zinc finger CCHC-type profile. | 359 | 374 | IPR001878 | GO:0003676|GO:0008270 | |
Lele47g0545 | 383 | SUPERFAMILY | RNA-binding domain, RBD | 237 | 323 | IPR035979 | GO:0003676 | |
Lele47g0545 | 383 | Pfam | Zinc knuckle | 357 | 374 | IPR001878 | GO:0003676|GO:0008270 | |
Lele47g0545 | 383 | Gene3D | - | 231 | 326 | IPR012677 | - | |
Lele47g0545 | 383 | MobiDBLite | consensus disorder prediction | 62 | 98 | - | - | |
Lele47g0545 | 383 | Gene3D | - | 335 | 383 | - | - | |
Lele47g0545 | 383 | MobiDBLite | consensus disorder prediction | 328 | 354 | - | - | |
Lele47g0545 | 383 | MobiDBLite | consensus disorder prediction | 1 | 145 | - | - | |
Lele47g0545 | 383 | Gene3D | - | 80 | 230 | IPR012677 | - | |
Lele47g0545 | 383 | SMART | rrm1_1 | 150 | 222 | IPR000504 | GO:0003723 | |
Lele47g0545 | 383 | SMART | rrm1_1 | 245 | 316 | IPR000504 | GO:0003723 | |
Lele47g0545 | 383 | CDD | RRM2_PHIP1 | 245 | 315 | IPR034362 | - | |
Lele47g0545 | 383 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 244 | 320 | IPR000504 | GO:0003723 | |
Lele47g0545 | 383 | SUPERFAMILY | Retrovirus zinc finger-like domains | 343 | 378 | IPR036875 | GO:0003676|GO:0008270 | |
Lele47g0545 | 383 | CDD | RRM1_PHIP1 | 151 | 222 | IPR034361 | - | |
Lele47g0545 | 383 | SMART | c2hcfinal6 | 358 | 374 | IPR001878 | GO:0003676|GO:0008270 | |
Lele47g0545 | 383 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 92 | 223 | - | - | |
Lele47g0545 | 383 | SUPERFAMILY | RNA-binding domain, RBD | 148 | 227 | IPR035979 | GO:0003676 | |
Lele47g0545 | 383 | MobiDBLite | consensus disorder prediction | 326 | 355 | - | - | |
Lele47g0545 | 383 | MobiDBLite | consensus disorder prediction | 19 | 33 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele47g0545 | Lele-ChrLele47 | 4680776 | 4684118 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele47g0545 | 149 | 318 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 29.282 | 2.30e-07 | 50.8 |