Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0525 ATGGATCCGTTATTTGTTCGAATTCCCCAGTTTGATTTTGATCCTAAAATGGATACTTTCCGGCTTTTTTTGTTGTTGGAGATTGGGATGTGCAATGATTTGCCTTCGGTTGTAGTTTTTGATTCATCGATATGGGATTTGATTTTAGTCGCTGAGTTTGCATTCCTCTTGTCTGGGAAATACTTTTGGTTATCGTTAGTGAGCAGGCGTAGGTTGAAGATGGCAGAAGCTGAGGATATTCAACCTCTCGTTTGTGACAATGGAACAGGAATGGTTAAGGCTGGATTTGCAGGAGATGATGCCCCGCGTGCTGTGTTCCCCAGCATTGTAGGTCGACCCCGTCACACTGGTGTGATGGTAGGCATGGGCCAGAAGGATGCATATGTTGGTGATGAAGCACAGTCTAAGCGAGGTATACTGACCCTCAAGTACCCCATTGAGCACGGAATTGTCAGCAATTGGGATGATATGGAAAAGATTTGGCATCACACCTTCTATAATGAGCTTCGTGTTGCCCCTGAAGAGCATCCAGTTTTGCTAACTGAGGCTCCCCTTAATCCCAAGGCCAATCGTGAGAAGATGACTCAAATTATGTTTGAGACTTTTAACACCCCTGCTATGTACGTAGCTATTCAAGCAGTTCTCTCACTATATGCAAGTGGTCGTACCACTGGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACAGTCCCTATCTATGAGGGTTATGCTCTCCCACATGCCATCCTTCGTCTTGACCTTGCTGGCCGTGACCTTACTGAGTACATGATGAAAATTCTGACTGAACGTGGTTATTCATTTACCACCTCAGCAGAGCGGGAAATTGTGAGAGATGTGAAGGAGAAGCTGGCCTATATCGCCCTTGACTATGAACAAGAGCTAGAGACTGCCAAGACCAGTTCTGCTGTTGAGAAGAGCTATGAGTTGCCTGATGGGCAGGTAATCACCATCGGTGCAGAGCGATTCAGATGTCCAGAGGTCCTGTTCCAACCATCCTTCATCGGAATGGAAGCAGCAGGCATTCATGAGACAACATACAACTCCATCATGAAGTGTGATGTTGACATCAGGAAGGACCTGTACGGTAACATTGTCCTCTCTGGAGGTTCAACCATGTTCCCTGGCATTGCTGATAGAATGAGCAAAGAGATTTCTGCATTAGCCCCAAGCAGCATGAAGATCAAGGTTGTTGCCCCACCTGAGAGAAAGTACAGTGTCTGGATTGGTGGTTCTATCTTGGCATCTCTCAGCACCTTCCAACAGATGTGGATTGCGAAGGCAGAGTACGACGAGTCTGGACCATCAATTGTGCATAGAAAATGCTTCTAA 1353 0.4634 MDPLFVRIPQFDFDPKMDTFRLFLLLEIGMCNDLPSVVVFDSSIWDLILVAEFAFLLSGKYFWLSLVSRRRLKMAEAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTEYMMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSFIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0525 450 FunFam Actin, alpha skeletal muscle 76 237 - -
Lele47g0525 450 ProSitePatterns Actins signature 1. 128 138 IPR004001 -
Lele47g0525 450 ProSitePatterns Actins and actin-related proteins signature. 179 191 IPR020902 -
Lele47g0525 450 Gene3D - 83 444 - -
Lele47g0525 450 ProSitePatterns Actins signature 2. 431 439 IPR004001 -
Lele47g0525 450 SUPERFAMILY Actin-like ATPase domain 222 450 IPR043129 -
Lele47g0525 450 Gene3D Actin; Chain A, domain 4 255 346 - -
Lele47g0525 450 Gene3D - 213 413 - -
Lele47g0525 450 CDD NBD_sugar-kinase_HSP70_actin 83 256 - -
Lele47g0525 450 FunFam Actin, alpha skeletal muscle 330 403 - -
Lele47g0525 450 SMART actin_3 80 450 IPR004000 -
Lele47g0525 450 FunFam Actin, alpha skeletal muscle 404 450 - -
Lele47g0525 450 FunFam Actin, alpha skeletal muscle 109 146 - -
Lele47g0525 450 PANTHER ACTIN 82 443 IPR004000 -
Lele47g0525 450 Pfam Actin 78 450 IPR004000 -
Lele47g0525 450 SUPERFAMILY Actin-like ATPase domain 79 228 IPR043129 -
Lele47g0525 450 FunFam Actin, muscle 255 346 - -
Lele47g0525 450 PRINTS Actin signature 190 203 IPR004000 -
Lele47g0525 450 PRINTS Actin signature 215 234 IPR004000 -
Lele47g0525 450 PRINTS Actin signature 311 327 IPR004000 -
Lele47g0525 450 PRINTS Actin signature 101 110 IPR004000 -
Lele47g0525 450 PRINTS Actin signature 124 135 IPR004000 -
Lele47g0525 450 PRINTS Actin signature 136 158 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0525 Lele-ChrLele47 4417771 4420906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0525 74 450 Cytoskeleton Gene Families AT3G12110 96.817 0.0 766