Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0488 ATGCGAATCAGCTGTAATGGATGTCGTGTTCTCCGAAAAGGTTGCAGTGAGAATTGCAGCATCAGACCTTGCTTGCAGTGGATCAAATCCCCTGAATCTCAAGCTAACGCCACTGTTTTTCTTGCTAAGTTCTATGGCCGTGCCGGCCTCTTGAACCTCATCAACGCTGGCCCTCAACACCTTCGTCCTGCTATTTTTCGGTCTCTGCTTTACGAAGCATGCGGGCGGATACTTAACCCGATTTATGGGTCCGTGGGTCTGTTATGGTCCGGAGACTGGCAGCGTTGTCAGGCCGCCGTGGAGGCGGTGCTGAAGGCTAATCCGATCACTCCGATCAACTCGGAAGCCGCCGTGAGTGGGCAGGGTCCACCGTTGAAGCCTTACGACATACGTCATGTGTGCAAGGACAAGAACTCGACCGAGTCGAACGATGGCCAGCAAGTTAAGTCTCGGTCACGGTTCAAGCGATCAGCCGGGAAGACCAAGAAGGCGAACAAGGGGACCGAGTTGAAGTCCGCTGAACCGGAAGAACCGCGCAGTGGATGCACTGTGTGTTGTGCAGCCATTGATGAGGTGGGGAACCGGTCCGCGAGCCATGAATCGTCGCTGAGTCACCTGTCGGAGGAGGTGCCGCGGAAGGCGGCGGCGGAAGGGGATAGCAAAGAGAGCGAGAGCATGGTGTCGGTGGAGACCGCCGAGACTTCTATTCTCTCCAGGGACGAACCGGAATCAACACCCAAACAGAGCGAGCGAGCCGAGGAAGCCGATGGGGCCGAATTGGGGCTGGAGCTGACGCTGGGGTTCAAACCGGTTGCACGTGAGGCTCACGTGATGCCGGTCAAGAAAAGAAAGATAGAATTTCAATTTCAAGAAGACTCAGGTGGTGAGTCGGCTAATAAGAAAGTAGCATGCATGAAGCTGGGGCTGGAATGCTCGGCTTGA 942 0.5552 MRISCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLLNLINAGPQHLRPAIFRSLLYEACGRILNPIYGSVGLLWSGDWQRCQAAVEAVLKANPITPINSEAAVSGQGPPLKPYDIRHVCKDKNSTESNDGQQVKSRSRFKRSAGKTKKANKGTELKSAEPEEPRSGCTVCCAAIDEVGNRSASHESSLSHLSEEVPRKAAAEGDSKESESMVSVETAETSILSRDEPESTPKQSERAEEADGAELGLELTLGFKPVAREAHVMPVKKRKIEFQFQEDSGGESANKKVACMKLGLECSA 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0488 313 MobiDBLite consensus disorder prediction 205 226 - -
Lele47g0488 313 MobiDBLite consensus disorder prediction 227 242 - -
Lele47g0488 313 MobiDBLite consensus disorder prediction 136 179 - -
Lele47g0488 313 MobiDBLite consensus disorder prediction 243 258 - -
Lele47g0488 313 PIRSF AS2 1 305 IPR017414 -
Lele47g0488 313 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Lele47g0488 313 MobiDBLite consensus disorder prediction 162 176 - -
Lele47g0488 313 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 266 - -
Lele47g0488 313 MobiDBLite consensus disorder prediction 197 258 - -
Lele47g0488 313 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0488 Lele-ChrLele47 3862704 3863737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0488 1 285 AS2 family AT3G02550 57.544 2.75e-103 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lele47g0488 LOB 1.2e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele47g0488 47 3862704 3863737 Lele48g0508 48 4867615 4868648 ECH
Lele47g0488 47 3862704 3863737 Lele47g0488 47 3862704 3863737 ECH
Lele45g0906 45 19795937 19796943 Lele47g0488 47 3862704 3863737 hybridization
Lele46g0987 46 17693287 17694320 Lele47g0488 47 3862704 3863737 hybridization