Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0464 ATGGCATCGGCTTCTCCTTCTCCCAATTCTTCTCCCTCTGCAGTGCCACCAACTTCTGCAAATAACACAAGACCACCACCTTCTTCACCTTCATCAACAAATTCTTCTAAGACCCCTTCTCCTTCAGCTACACCTCCTGCTCAGGCAGTGCCTTCAACCCCGCCTCCTTCTACGTCTCTTTCTCCGCCGCCATCACCACCAGATTCTCCACCTGCATCTCCTCCACCTTCAGCTGCCACAGCCCCTGCTTCAAATTCAACCTCACCAACCCCTCCTAGTTTATCCCCACCACCTCCATTGGCTGCTTCACCACCAGATCCTTCACCTCCTGCTGCAAAAACTCCTACCCCGTCACCTATTTCTCCAATTCTTCCTCCTCCAGCAAATAACTCAACACCATCATCGCGTGGTGAGCCTTCTCCATCACGGGGAAAGCCACCGGAAAGTACTCCTTTGCGCCCTTCACATGCATCACCTCCATCAGTTTCTAAGTCTCCTCCCTCCACAAATGCTGCCCCTCCTTCCAAAACGCCTTCAACTCCTTCAGTCCCTCCTCCAAAGTCTTCGCATGCTCCTCCACACAATGCATCTGCAGCTAACAGGCCCCCTGCACCCCTACCCTCTTTTCCAACAGCATCGCCTACTGGGAAAACATCCAATCATAGAAATACATCTGCAGACGGCGCACCTTCACCGTCAGGAGGGTCGAATACTGGACTATTCATAGTTATTGGCATTATATTTGGCTTTGTTGTCCTCAGCCTTCTTGTTATGGCGATGTGGTGCGTATGGAAGCGGAAGAGAAAGGAAGCGAAATCGAAAGTTGGTTATACTATGCCTTCCCCGTATGCCTCATCCCATAACTCAGGCACAACGATCTTAAGGCAACAGTCTTCCCTTTCTTATAATGGCTATGGTAGTGATTTCGCATATTCACCATCAGATCCAGGTGGACTAAGTGGTTCAAGATCGTGGTTTACATATGAAGAACTTGTCCAAGCAACAAATGGGTTTTCAGCACAAAATCTGTTGGGTGAAGGTGGATTTGGTTGTGTTTACAAAGGCTTTCTCATGGATGGAAGAGCAGTAGCTGTGAAACAGCTCAAAGATGGAGGTGGGCAAGGGGAGCGTGAGTTTAGAGCAGAAGTTGAAATTATTAGCCGAGTACATCATCGCCACCTTGTTTCCTTGGTGGGCTACTGTATAACTGAACATCAGAGATTGCTTGTCTATGACTATGTTCCCAACAATACCCTTCATTACCATCTCCACGGTCAAAACAGGCCAGTTATGGATTGGGCTACAAGAGTGAAGGTTGCAGTTGGCGCAGCTCGTGGAATAGCTTACCTACATGAAGACTGCCATCCACGCATTATTCACCGAGACATAAAGTCATCAAACATCCTTCTTGATAACAACTTTGAAGCTCAAGTTTCCGACTTTGGGCTTGCAAAATTAGCAATGGATTCATTTACACATGTAACCACACGAGTGATGGGGACCTTTGGGTACATGGCACCAGAATATGCAACAAGTGGTAAACTGTCTGAAAAGTCGGATGTTTATTCATTCGGGGTTGTGCTTTTGGAGCTAATTACAAGTCGGAAGCCTGTAGATGCCTCTCAGCCCACTGGTGATGAGAGCCTGATTGAATGGGCTCGACCTCTATTGAATCGAGTGCTTGAAAATGAAGACTATGATATACTGGTAGATCCACGACTCAAAAAGAACTATAATAGAAATGAAATGTTTCGGATGATAGAGGCCGCGGCTGCCTGTGTGCGTCACTCTGCAGCAAAAAGACCACGAATGAGTCAGGTCGCAAGAGCTTTGGATTCGATAGATGAGTTTTCAGATCTCTGTAATGGAATAAAACCTGGCCAGAGCACAACATTTAACCCTTCACCACCATCTGCACAAGTCCGAATGTTTCAAAGAATGGTTTTTGGTGGGGCCAGTCAAGATTTCAGTTCCAGTTTCTTTAAGGATTCTCAGAGTAGCTGGAGAAGCAGAGACCAGGAGAACTCAAAACACCATGATCTCCCAAAATAA 2052 0.4698 MASASPSPNSSPSAVPPTSANNTRPPPSSPSSTNSSKTPSPSATPPAQAVPSTPPPSTSLSPPPSPPDSPPASPPPSAATAPASNSTSPTPPSLSPPPPLAASPPDPSPPAAKTPTPSPISPILPPPANNSTPSSRGEPSPSRGKPPESTPLRPSHASPPSVSKSPPSTNAAPPSKTPSTPSVPPPKSSHAPPHNASAANRPPAPLPSFPTASPTGKTSNHRNTSADGAPSPSGGSNTGLFIVIGIIFGFVVLSLLVMAMWCVWKRKRKEAKSKVGYTMPSPYASSHNSGTTILRQQSSLSYNGYGSDFAYSPSDPGGLSGSRSWFTYEELVQATNGFSAQNLLGEGGFGCVYKGFLMDGRAVAVKQLKDGGGQGEREFRAEVEIISRVHHRHLVSLVGYCITEHQRLLVYDYVPNNTLHYHLHGQNRPVMDWATRVKVAVGAARGIAYLHEDCHPRIIHRDIKSSNILLDNNFEAQVSDFGLAKLAMDSFTHVTTRVMGTFGYMAPEYATSGKLSEKSDVYSFGVVLLELITSRKPVDASQPTGDESLIEWARPLLNRVLENEDYDILVDPRLKKNYNRNEMFRMIEAAAACVRHSAAKRPRMSQVARALDSIDEFSDLCNGIKPGQSTTFNPSPPSAQVRMFQRMVFGGASQDFSSSFFKDSQSSWRSRDQENSKHHDLPK 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0464 683 SMART serkin_6 338 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele47g0464 683 CDD STKc_IRAK 344 614 - -
Lele47g0464 683 MobiDBLite consensus disorder prediction 25 43 - -
Lele47g0464 683 Gene3D Phosphorylase Kinase; domain 1 318 413 - -
Lele47g0464 683 MobiDBLite consensus disorder prediction 667 683 - -
Lele47g0464 683 Coils Coil 681 683 - -
Lele47g0464 683 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Lele47g0464 683 MobiDBLite consensus disorder prediction 1 18 - -
Lele47g0464 683 MobiDBLite consensus disorder prediction 211 234 - -
Lele47g0464 683 MobiDBLite consensus disorder prediction 1 234 - -
Lele47g0464 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Lele47g0464 683 MobiDBLite consensus disorder prediction 44 78 - -
Lele47g0464 683 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 251 657 - -
Lele47g0464 683 MobiDBLite consensus disorder prediction 658 683 - -
Lele47g0464 683 SUPERFAMILY Protein kinase-like (PK-like) 317 611 IPR011009 -
Lele47g0464 683 MobiDBLite consensus disorder prediction 171 191 - -
Lele47g0464 683 MobiDBLite consensus disorder prediction 155 170 - -
Lele47g0464 683 FunFam proline-rich receptor-like protein kinase PERK8 414 626 - -
Lele47g0464 683 Gene3D Transferase(Phosphotransferase) domain 1 414 622 - -
Lele47g0464 683 MobiDBLite consensus disorder prediction 89 129 - -
Lele47g0464 683 FunFam Proline-rich receptor-like protein kinase PERK8 311 413 - -
Lele47g0464 683 Pfam Protein tyrosine and serine/threonine kinase 341 610 IPR001245 GO:0004672|GO:0006468
Lele47g0464 683 ProSiteProfiles Protein kinase domain profile. 338 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0464 Lele-ChrLele47 3520438 3525304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0464 210 673 Trihelix Transcription Factor Family AT5G38560 67.789 0.0 653
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lele47g0464 PK_Tyr_Ser-Thr 2.9e-46 CL0016