Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0438 ATGGAAGAAGGTGGTTCTAATGGGACTTCTTCATGTGTGATGGGTTTTGTTGGAGAGAACAGTAACCACAATAGTGGTGGTGGTGGGGGGTTGTGTGCATCTTCATCTCATCCAATGATGATGATGATGCCTTTTGTGACTACTTGTCATAATGTTTCCCATCAAATTCCATTCAGTCCTAATCCTATCAATAATAATGCTCCTCCATCACACACTGCTCCTTTCCTTCTTCCTTTCCCTCCTTCCTGCACTAATAACACTTCTACTTCTAATCATCAACCCCAAAACCCCAACAACAACAACAGTTCTGGGTTAGCCTCCTTTTTCATGGACGCCACCACCAACAACAACAACAACGGTAGCTCGGCGTCTTCTTCTTCTGCTGCTGCTAAAGCAAAGATCATGGCTCATCCTCACTATCATCGTCTTTTGTCTGCCTATGTTAATTGTCAAAAGGTTGGAGCGCCGCCGGAAGCGGTGGCGAGGTTAGAGGAAGCATGTGCGTCTGCGTTGACAATGGCAGCTGCTGGCGGCGCCGGCGCGGGTTCGGTGTGTATCGGAGAAGATCCGGCACTCGATCAGTTTATGGAGGCATATTGTGAGATGCTGACCAAGTATGAGCAAGAACTCTCCAAACCCTTCAAGGAAGCTATGCACTTTCTTCATACCATCGAGTCTCAGTTCAAAGCTCTCGCTATTTCTTCTTCTTCTTCAGACTTCGCTAATGGTGAGGCGAGCGATCGGAATGGATCATCTGAAGAAGACACGGATGTGCCGAAGAATCTGATCGATCCACTGGCAGACGACCAAGAACTGAAGGGCCAACTTCTTCGCAAATACAGCGGATACCTGGGCAGCCTGAAGCAGGAATTCATGAAGAAGAGGAAGAAAGGGAAGCTTCCCAAAGAAGCAAGACAACAACTTCTTGATTGGTGGAGCAGACACTATAAATGGCCGTACCCATCTGAGTCACAGAAGCTGGCACTGGCAGAATCAACAGGACTGGATCAGAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAGCGACATTGGAAACCATCAGAGGATATGCAATTCATGGTGGTGGATCCTTCTCATCCTCATCACCACTATTACATGGACACTGTTCTTGGCAATCCCTATCCAATGATCTAA 1158 0.468 MEEGGSNGTSSCVMGFVGENSNHNSGGGGGLCASSSHPMMMMMPFVTTCHNVSHQIPFSPNPINNNAPPSHTAPFLLPFPPSCTNNTSTSNHQPQNPNNNNSSGLASFFMDATTNNNNNGSSASSSSAAAKAKIMAHPHYHRLLSAYVNCQKVGAPPEAVARLEEACASALTMAAAGGAGAGSVCIGEDPALDQFMEAYCEMLTKYEQELSKPFKEAMHFLHTIESQFKALAISSSSSDFANGEASDRNGSSEEDTDVPKNLIDPLADDQELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVVDPSHPHHHYYMDTVLGNPYPMI 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0438 385 MobiDBLite consensus disorder prediction 241 262 - -
Lele47g0438 385 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 89 360 - -
Lele47g0438 385 MobiDBLite consensus disorder prediction 60 111 - -
Lele47g0438 385 SMART KNOX2_2 182 233 IPR005541 GO:0003677|GO:0005634
Lele47g0438 385 SMART KNOX1_2 128 172 IPR005540 GO:0003677|GO:0005634
Lele47g0438 385 SMART HOX_1 293 358 IPR001356 GO:0003677
Lele47g0438 385 CDD homeodomain 303 355 IPR001356 GO:0003677
Lele47g0438 385 SUPERFAMILY Homeodomain-like 293 370 IPR009057 -
Lele47g0438 385 MobiDBLite consensus disorder prediction 248 262 - -
Lele47g0438 385 Pfam Homeobox KN domain 311 350 IPR008422 GO:0003677|GO:0006355
Lele47g0438 385 ProSitePatterns 'Homeobox' domain signature. 329 352 IPR017970 GO:0000981|GO:0006355
Lele47g0438 385 FunFam Homeobox protein knotted-1-like 2 296 358 - -
Lele47g0438 385 Pfam ELK domain 271 292 IPR005539 GO:0003677
Lele47g0438 385 MobiDBLite consensus disorder prediction 79 111 - -
Lele47g0438 385 ProSiteProfiles ELK domain profile. 271 291 IPR005539 GO:0003677
Lele47g0438 385 SMART ELK_2 271 292 IPR005539 GO:0003677
Lele47g0438 385 Pfam KNOX1 domain 131 168 IPR005540 GO:0003677|GO:0005634
Lele47g0438 385 Gene3D - 296 358 - -
Lele47g0438 385 ProSiteProfiles 'Homeobox' domain profile. 291 354 IPR001356 GO:0003677
Lele47g0438 385 Pfam KNOX2 domain 185 231 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0438 Lele-ChrLele47 3291457 3296585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0438 130 384 Homeobox Transcription Factor Family AT1G62360 78.682 2.85e-128 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele47g0438 KNOX2 1.5e-21 No_clan