Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0384 ATGTGGGCTCCATCTGCCCAGCCTCCGCCGCCGCAGCAGGCTGTTGCTCCGCCGCAACCCACCCAACATGTCGCTCCGAGTAGCACCGAAGAGGTCCGTACCCTTTGGATCGGCGATTTGCAGTACTGGATGGATGAGAACTATCTGTATAATTGTTTTTCGCATACAGGCGAGGTTGCTTCTGTAAAAGTCATTCGGAATAAGCAAACTAATTCATCGGAAGGTTATGGGTTTATTGAGTTTTTCACCCGTGCTGCTGCAGAGAGAATTCTTCAAACATTTAATGGCACAATTATGCCTAATGGTGGGCAAAACTTTAGATTGAATTGGGCAACTTTTAGTTCGGGTGATAGGCGTCATGATGATTCTCCAGATTACACAATTTTTGTTGGAGACTTGGCTGCCGATGTCACAGATTACCTGCTACAGGAGACATTTAGGGCCAGATATCCCTCAGTAAAGGGTGCAAAAGTGGTAATTGACAGGCTCACTGGGCGGACGAAGGGTTATGGTTTTGTCAAGTTTGGAGATGAGAATGAACAGATACAAGCTATGACTGAGATGCAAGGGGTTCTTTGCTCAACAAGACCCATGCGAATTGGACCAGCCACAAACAAAAATGTTGGAGGACAGCAAAAAGCTTCCTATCAGAATCCTCAAGGGTCACAGAACGAGAATGATCCAAATAATACAACTATTTTCGTAGGCAATTTGGATCCTAATGTTACAGATGATCATTTAAGGCAAGTTTTTGGCCAGTATGGAGAATTAATACATGTGAAGATTCCAGCAGGCAAGAGATGTGGATTCGTCCAATTCACGGATAGGAGCTGTGCTGAAGAGGCCTTACGGATGCTAAATGGATCAGTGTTGGGTGGACAAAATGTCCGTCTTTCATGGGGCCGCAGTCCTTCAAACAAACAGGCTCAGCCAGAACCAAGCCAGTATGGGGGATATTATGGGTATGCTCAAGGGTATGAGAATTATGGGTACCCTCCTGCTGCTACGCAGGATCCCAACATGTATGGAAGCTATCCAGGTTATGCTAACTACCAACCACCACAGCAACAGCAGCAAATGGGATATAGCTAA 1092 0.4588 MWAPSAQPPPPQQAVAPPQPTQHVAPSSTEEVRTLWIGDLQYWMDENYLYNCFSHTGEVASVKVIRNKQTNSSEGYGFIEFFTRAAAERILQTFNGTIMPNGGQNFRLNWATFSSGDRRHDDSPDYTIFVGDLAADVTDYLLQETFRARYPSVKGAKVVIDRLTGRTKGYGFVKFGDENEQIQAMTEMQGVLCSTRPMRIGPATNKNVGGQQKASYQNPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELIHVKIPAGKRCGFVQFTDRSCAEEALRMLNGSVLGGQNVRLSWGRSPSNKQAQPEPSQYGGYYGYAQGYENYGYPPAATQDPNMYGSYPGYANYQPPQQQQQMGYS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0384 363 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 231 303 IPR000504 GO:0003723
Lele47g0384 363 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 23 316 - -
Lele47g0384 363 MobiDBLite consensus disorder prediction 205 231 - -
Lele47g0384 363 MobiDBLite consensus disorder prediction 342 363 - -
Lele47g0384 363 CDD RRM1_SECp43_like 34 114 - -
Lele47g0384 363 MobiDBLite consensus disorder prediction 1 28 - -
Lele47g0384 363 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 128 191 IPR000504 GO:0003723
Lele47g0384 363 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 100 IPR000504 GO:0003723
Lele47g0384 363 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 296 IPR000504 GO:0003723
Lele47g0384 363 FunFam Polyadenylate-binding protein RBP45 1 117 - -
Lele47g0384 363 Gene3D - 32 112 IPR012677 -
Lele47g0384 363 CDD RRM3_NGR1_NAM8_like 230 301 - -
Lele47g0384 363 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 126 205 IPR000504 GO:0003723
Lele47g0384 363 Gene3D - 125 201 IPR012677 -
Lele47g0384 363 MobiDBLite consensus disorder prediction 1 17 - -
Lele47g0384 363 CDD RRM2_SECp43_like 125 204 - -
Lele47g0384 363 SUPERFAMILY RNA-binding domain, RBD 216 329 IPR035979 GO:0003676
Lele47g0384 363 SMART rrm1_1 232 299 IPR000504 GO:0003723
Lele47g0384 363 SMART rrm1_1 127 201 IPR000504 GO:0003723
Lele47g0384 363 SMART rrm1_1 34 109 IPR000504 GO:0003723
Lele47g0384 363 FunFam Polyadenylate-binding protein RBP45C 210 313 - -
Lele47g0384 363 MobiDBLite consensus disorder prediction 349 363 - -
Lele47g0384 363 Gene3D - 208 312 IPR012677 -
Lele47g0384 363 SUPERFAMILY RNA-binding domain, RBD 10 112 IPR035979 GO:0003676
Lele47g0384 363 MobiDBLite consensus disorder prediction 199 231 - -
Lele47g0384 363 SUPERFAMILY RNA-binding domain, RBD 113 219 IPR035979 GO:0003676
Lele47g0384 363 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 113 IPR000504 GO:0003723
Lele47g0384 363 FunFam Polyadenylate-binding protein RBP45C 118 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0384 Lele-ChrLele47 2826610 2830924 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0384 3 310 Eukaryotic Initiation Factors Gene Family AT1G22760 28.754 1.03e-27 112