LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele47g0378	ATGGACTCTCAAAGGTTGTTACTTTCCCGAAAAGATCCTAGGCCCCTGGGTTTACCTGCTGGGCGAGTGCTCCCTTCTGTCACTGCAAAATCCATGCCCGCTGAGATGGCTCAGAAGCCGGTTCCTCCTGCGTTATTGGAACAGTTCAAGGCTCTGCTCAAGCGGCGCAACGATGAACATATGGCTTTGTCCGACGACGACGCGCCACCGCCTTCCACTGAGGAGATTGTGCAGCTTTACGAGATAGTCTTGTCTGAGCTTACTCTAAATTCGAAGCCCATCATCACCGAACTTACCATCATTGCGGGAGACCAGAAGGAGCATGGCAAGGGTATAGCTGATGCAATTTGCGATCGAATTCTTGAGGTGCCTTTGGAGCAAAAGCTTCCTTCACTATATCTTTTAGACAGTATTGTGAAGAATATTGGTGGGGAGTTTGTTAGATACTTCTCCTTACGTCTTCCTGAAGTGTTCTGTGTGGCATACCGGGAAGTTCAGCCTAATTTACATCATGCAATGCGTCATCTCTTTGGTACCTGGTCAACAGTCTTTCCAGCTTCTGTTCTGCGCAAGATTGAAGCGCAGCTGCATTTTTCTCAAGCAGTTAATAATCAGAATATATCATCTAGCATTAATCCCCCTAGGGTGTCTGAAGCTACACAGCGATCTCATGGCATTCATGTTAATCCAAAATACTTGCGACAGTTGGAAAACTCAACAATGGACACTGACAGTAAGGAGTTGTGTGCTTTCTGCTGTATGGTGATTACTGCTGAATGTTCGACATGCAATAGAAACATTTTCAATCTCTATGTGGGAACCGGTTTGAAAATGGATATCAATTCTGATGAGGTTGGTTTTTCCTCTCAGGATTGGGGTGAAATGCCAGATTCGACAAGCGTGGGACATGCAAATTTTGGCCTTGGAACTAAGAAGATGCATCAGGCTTCAATTAGCAGGCATGGAAAACATTATCCTGGTGATGGTCGGAATCAATTCCAATTTTCTACAAATGGAAATCAACGCCAAAGTCCAAGAGCTCTCATTGATGCCTATGGCAGTGACAAGAGGGTGGAAACTTCAAGCAATAAGCCGTTGGTTGAACCGCTTGACATAAATGGTATAGACAACAAGGTGGTGTCAACACCATGGCAGAATACTGAAGAGGAGGAGTTTAATTGGGAAGATATGAGTCCAACATTGGTGGAGCATAAGAGAAGTAATGGCGTCTTACCATCATCAATTGTTTTGTCTAGGGAGGGATCTAGTGGTATTGCTGCAGATAATGCTGCGGCTTTGGGTCAAGATACCAGAAGTGGCTGGGTTAGTCAATCTCTGCTTCCTCCCATGAATGATCCTACTATTATAGTAGAAGATGCATTTGTGTGGTCTGGTAATGGTGGTGGATCATTGGGTCTGGTCTCCCATCCTCCTGATGCCTGGAAGATTTCTCATCATTTGCCTAATCCTTCACAACACATTAATATCAGAGGTCGAGCAAGGAATGCTGATGTGTCTCCTATTGATAGCATTCCAATTACTAAAGTAAACTTGTATGGGCTTGAGGCTCCTCCACCAACTTTACCTGCATCTTTTCGAACTAGGCCCCCTGTAAATGTGCATGCTAGTCGTCCACCCTCTTTAAATCCTATTTTTTCGTTGCAGAAACATGCTAGGAACCAATTTGAAGCAATAAATAGTAGTAACACCATTTTAGATCAAGACCCTACTAAATCGTTATTCATGCCTGAACAGCTCTTGGACAGTGGTGAGAACAATAATATTGGTAAATTAACATTTCCTCAGATTCCTAATCAGCTATCCAGGCTAATTTCATCGAACCAGCCTAACCGTGGACAAGCATTACAACGTTTTCCACCTCAGGATGTGCGAGAAAGTTTTGCTGAATCGCAAGCTCCAGCAGCTTCTCAATTTAGTCATGGGCGCCCTTTGCAAAGACATGGTGCTGCAATCAGCGCAACTGTGTCCATGTCGTTACCTATTGGACAGTTTCCTTTACCAGTTCAAAACATGGCAAACAACACTTTTCCAATACAGCAGGGAGCCTTGCGTCCATTTCCAGCTCCTCGTCCTCCATCACAAGTGACGCCTCATACCAAAGATAGTCCATATACCTCGAGCCAACAGCCAGCTGGTGCATTTTCTGGTCTGATCAATTCACTTATGGCACAAGGTTTGATCTCATTGACTGGACAACCCCCTGCACAGGATTCTGTTGGAACTGAATTTAATCCTGATGTTCTGAAGATCCGGCATGAGTCTGCAATTAGTGTTTTATATTCTGATCTCCCTCGACAATGCACAACTTGTGGTCTTCGATTCAAGAATCAAGAGGAGCACAGTAGTCACATGGATTGGCATGTGACTAAGAATCGGATGTCTAAAAATCGTAAGCAGAAGCCTTCTCGTAAGTGGTTTGTGAGTGAGAGAATGTGGCTTAGAGGTGCAGAGGCATTGGGAACAGAAGCGGTACCTGGCTTTTTGCCAACTGAGACCTTGGACGAAAATAAAGAAGATGAAGAGATGGCTGTGCCAGCTGATGAAGGCCAGAATACATGTGCGTTATGTGGAGAGCCTTTTGAAGAGTTTTATAGTGATGAAACTGAGGAATGGATGTACAGAGGAGCTGTATACCTAAATGTTCCCAAGGGAACAGTGCCAGGCATGGATAGGTCACAGTTAGGTCCAATCGTTCATGCTAAATGCAGATCTGAATCTAGTGCTGTCCCCACCGAGGAATTTAGACAGGATGACGTGGACGCTGATGAAGAGGATAGTCAAAGAAAACGAATGCGGAGTTAA	2823	0.446	MDSQRLLLSRKDPRPLGLPAGRVLPSVTAKSMPAEMAQKPVPPALLEQFKALLKRRNDEHMALSDDDAPPPSTEEIVQLYEIVLSELTLNSKPIITELTIIAGDQKEHGKGIADAICDRILEVPLEQKLPSLYLLDSIVKNIGGEFVRYFSLRLPEVFCVAYREVQPNLHHAMRHLFGTWSTVFPASVLRKIEAQLHFSQAVNNQNISSSINPPRVSEATQRSHGIHVNPKYLRQLENSTMDTDSKELCAFCCMVITAECSTCNRNIFNLYVGTGLKMDINSDEVGFSSQDWGEMPDSTSVGHANFGLGTKKMHQASISRHGKHYPGDGRNQFQFSTNGNQRQSPRALIDAYGSDKRVETSSNKPLVEPLDINGIDNKVVSTPWQNTEEEEFNWEDMSPTLVEHKRSNGVLPSSIVLSREGSSGIAADNAAALGQDTRSGWVSQSLLPPMNDPTIIVEDAFVWSGNGGGSLGLVSHPPDAWKISHHLPNPSQHINIRGRARNADVSPIDSIPITKVNLYGLEAPPPTLPASFRTRPPVNVHASRPPSLNPIFSLQKHARNQFEAINSSNTILDQDPTKSLFMPEQLLDSGENNNIGKLTFPQIPNQLSRLISSNQPNRGQALQRFPPQDVRESFAESQAPAASQFSHGRPLQRHGAAISATVSMSLPIGQFPLPVQNMANNTFPIQQGALRPFPAPRPPSQVTPHTKDSPYTSSQQPAGAFSGLINSLMAQGLISLTGQPPAQDSVGTEFNPDVLKIRHESAISVLYSDLPRQCTTCGLRFKNQEEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSERMWLRGAEALGTEAVPGFLPTETLDENKEDEEMAVPADEGQNTCALCGEPFEEFYSDETEEWMYRGAVYLNVPKGTVPGMDRSQLGPIVHAKCRSESSAVPTEEFRQDDVDADEEDSQRKRMRS	940

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele47g0378	940	MobiDBLite	consensus disorder prediction	704	718	-	-
	Lele47g0378	940	SMART	558neu5	75	197	IPR006569	-
	Lele47g0378	940	MobiDBLite	consensus disorder prediction	910	940	-	-
	Lele47g0378	940	FunFam	polyadenylation and cleavage factor homolog 4	69	197	-	-
	Lele47g0378	940	MobiDBLite	consensus disorder prediction	913	940	-	-
	Lele47g0378	940	MobiDBLite	consensus disorder prediction	1	22	-	-
	Lele47g0378	940	Pfam	CID domain	86	190	IPR006569	-
	Lele47g0378	940	ProSiteProfiles	CID domain profile.	72	200	IPR006569	-
	Lele47g0378	940	MobiDBLite	consensus disorder prediction	612	650	-	-
	Lele47g0378	940	PANTHER	PRE-MRNA CLEAVAGE COMPLEX II	64	930	IPR045154	GO:0000993\|GO:0003729\|GO:0006369\|GO:0006378\|GO:0006379
	Lele47g0378	940	ProSitePatterns	Zinc finger C2H2 type domain signature.	774	794	IPR013087	-
	Lele47g0378	940	CDD	CID_Pcf11	77	197	-	-
	Lele47g0378	940	MobiDBLite	consensus disorder prediction	687	718	-	-
	Lele47g0378	940	Gene3D	-	68	197	IPR008942	-
	Lele47g0378	940	SUPERFAMILY	ENTH/VHS domain	71	202	IPR008942	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele47g0378	Lele-ChrLele47	2768506	2775489	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele47g0378	1	940	C2H2 Transcription Factor Family	AT4G04885	43.913	0.0	635

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Lele47g0378		CID	4.9e-10	CL0020